DreEX0037669 @ danRer10
Exon Skipping
Gene
ENSDARG00000039987 | hivep2a
Description
human immunodeficiency virus type I enhancer binding protein 2a [Source:ZFIN;Acc:ZDB-GENE-041014-354]
Coordinates
chr20:37613792-37619961:-
Coord C1 exon
chr20:37614828-37619961
Coord A exon
chr20:37614460-37614611
Coord C2 exon
chr20:37613792-37613967
Length
152 bp
Sequences
Splice sites
3' ss Seq
TTTTCTGTTTACATTTCCAGTTG
3' ss Score
9.59
5' ss Seq
AGGGTATGT
5' ss Score
8.34
Exon sequences
Seq C1 exon
CAGATTCCCCAGAGGAGCTTGATGTTGATGAATCCACACCAGAGGCAAGCTCAAGCCCACAATCAGTGATGTCCTCAAGTGATACTCAAGAAGAATCCAAACAGAGCATGGGTAACAAGTTTCCAGTAAACATGCTAGTGCAGCTAGCTGCCAATCAAGGCGGTGGAGTCGTTGGTAGCACACTAATGCTGACTGACTTGGCAGATGTCCACCAGTTTTTTCAGTTCCCAAGTCTTCGCACACCAACCAGTGTCAGCTGGTGCTTCTTAAATTATACCAAACCAAATTATGCCCATACAACTCCCTTATCCTCTGTGTATGGTTCTTGGTGCATCAGCTCCTACAACCCCAACCCACTGAACCTCAGCACCAAGGCCACCCTGGCACTTCTTCGATCCAAACAGAGGAAGAATACAGAGATGTACACAATGGCTGCTATGCATCAACCTGGCACTGGAAAATTGGTTTCATCTCTGCGCTGGAAACAGAAGTTTGAGCAG
Seq A exon
TTGAAGCCAGAGCATATACAGTTGGATGTTGGGAAGTTTGCAAAGAAAATGAAGGGAATCAGCTCAAGAGACAGGGGGAAAGAGGACCATGGAGAAAAAGAGGCTTGTTCAAAACAGGCTGAACCCACTCGCATCAAAATCTTTGAAGGAGG
Seq C2 exon
GTACAAATCCAATGAAGACTATGTTTATGTGCGTGGCCGAGGCCGGGGAAAGTACATCTGCGAGGAGTGCGGGATCCGCTGTAAAAAACCAAGCATGCTGAAAAAACATATTCGCACACACACAGATGTCAGGCCATATGTCTGCAAGTTCTGCAACTTTGCTTTTAAAACAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000039987-'10-9,'10-8,11-9
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.693 A=0.373 C2=0.000
Domain overlap (PFAM):
C1:
PF134651=zf-H2C2_2=WD(100=1.6)
A:
NO
C2:
PF134651=zf-H2C2_2=WD(100=43.3)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACCCTGGCACTTCTTCGATC
R:
CTGACATCTGTGTGTGTGCGA
Band lengths:
256-408
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]