HsaEX6049694 @ hg38
Exon Skipping
Gene
ENSG00000010818 | HIVEP2
Description
human immunodeficiency virus type I enhancer binding protein 2 [Source:HGNC Symbol;Acc:HGNC:4921]
Coordinates
chr6:142764799-142775125:-
Coord C1 exon
chr6:142769552-142775125
Coord A exon
chr6:142768382-142768536
Coord C2 exon
chr6:142764799-142764974
Length
155 bp
Sequences
Splice sites
3' ss Seq
TCTCTCTTCTTGTCTTACAGATG
3' ss Score
12.87
5' ss Seq
AGGGTAAGG
5' ss Score
9.16
Exon sequences
Seq C1 exon
AAGAATCTTCAGATGAATTAGATATCGATGAGACGGCATCGGACATGAGCATGAGCCCACAGAGTTCTTCATTACCAGCAGGAGATGGTCAGCTGGAAGAGGAAGGGAAGGGCCACAAGCGGCCTGTTGGCATGCTGGTCCGCATGGCCTCTGCCCCCAGCGGGAACGTGGCAGACTCAACTCTTCTTCTCACGGACATGGCAGATTTCCAGCAGATTCTTCAGTTCCCCAGTCTGCGGACAACAACTACTGTGAGTTGGTGCTTCTTGAATTATACAAAACCCAATTATGTGCAACAGGCCACCTTCAAATCCTCGGTTTATGCTTCATGGTGCATTAGTTCCTGTAATCCAAACCCATCAGGATTGAACACCAAGACCACGCTGGCTCTTCTGAGGTCCAAGCAAAAAATCACTGCAGAAATTTATACTCTGGCTGCTATGCATAGGCCTGGAACCGGCAAGCTTACATCATCAAGTGCTTGGAAGCAGTTTACTCAG
Seq A exon
ATGAAACCTGATGCGTCCTTTTTATTTGGCAGCAAACTAGAAAGGAAACTAGTGGGAAATATCTTAAAGGAAAGAGGGAAAGGAGATATTCATGGAGATAAAGATATTGGATCCAAACAAACTGAGCCAATCCGAATTAAAATATTTGAAGGAGG
Seq C2 exon
GTACAAATCGAATGAAGATTATGTATATGTCAGAGGACGTGGCCGGGGAAAGTACATTTGTGAAGAATGTGGGATTCGCTGTAAGAAGCCAAGCATGCTCAAAAAACACATCCGTACCCATACTGATGTTCGGCCTTATGTATGCAAGTTATGTAACTTTGCCTTCAAAACGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000010818-'33-30,'33-28,34-30=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.652 A=0.120 C2=0.000
Domain overlap (PFAM):
C1:
PF134651=zf-H2C2_2=WD(100=1.5)
A:
NO
C2:
PF134651=zf-H2C2_2=WD(100=43.3)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTCTTCTGAGGTCCAAGCAA
R:
AGGCCGAACATCAGTATGGGT
Band lengths:
250-405
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains