MmuEX6047394 @ mm9
Exon Skipping
Gene
ENSMUSG00000015501 | Hivep2
Description
human immunodeficiency virus type I enhancer binding protein 2 [Source:MGI Symbol;Acc:MGI:1338076]
Coordinates
chr10:13847099-13859366:+
Coord C1 exon
chr10:13847099-13852604
Coord A exon
chr10:13853546-13853700
Coord C2 exon
chr10:13859191-13859366
Length
155 bp
Sequences
Splice sites
3' ss Seq
TCTCTCTTTTGATCCTGCAGATG
3' ss Score
11.99
5' ss Seq
GGGGTAAGG
5' ss Score
8.05
Exon sequences
Seq C1 exon
GAGAGTCCTCCGATGAGCTGGACATGGATGAGACGTCGTCAGACATGAGCATGAGCCCTCAGAGCTCTGCACTGCCCACCGGAGGCGGTCAGCAGGAAGAGGAAGGGAAAGCCCGCAAGCTGCCCGTCAGCATGCTGGTCCACATGGCCTCTGGTCCTGGAGGAAATGTGGCAAATTCCACTCTTCTTTTCACAGACGTGGCCGATTTCCAGCAGATACTTCAGTTCCCCAGTCTGCGGACAACTACTACTGTGAGTTGGTGCTTCTTAAATTATACAAAACCCAGTTTTGTGCAACAGGCCACCTTCAAATCCTCCGTTTATGCTTCATGGTGCATTAGTTCCTGTAACCCAAACCCATCAGGATTGAACACCAAGACCACGCTGGCCCTTCTGAGATCCAAACAAAAAATTACTGCAGAAATTTATACTCTGGCTGCTATGCACAGGCCCGGAGCTGGTAAGCTCACTTCATCCAGCGTCTGGAAGCAGTTTGCACAG
Seq A exon
ATGAAGCCTGATGCGCCCTTCTTGTTTGGCAACAAACTAGAAAGGAAATTAGCAGGAAATGTCCTAAAGGAAAGAGGGAAAGGAGAGATTCACGGAGATAAAGATCTTGGATCCAAACAAACTGAGCCAATCCGAATTAAGATCTTTGAAGGGGG
Seq C2 exon
GTACAAATCCAATGAAGATTATGTGTATGTCAGAGGACGTGGACGGGGAAAGTATATTTGTGAAGAGTGTGGAATTCGCTGTAAGAAGCCAAGTATGCTCAAAAAACACATACGCACTCATACTGATGTTCGGCCTTATGTATGCAAGTTATGTAATTTTGCCTTCAAAACGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000015501-'11-10,'11-9,12-10=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.702 A=0.192 C2=0.000
Domain overlap (PFAM):
C1:
PF134651=zf-H2C2_2=WD(100=1.5)
A:
NO
C2:
PF134651=zf-H2C2_2=WD(100=43.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCAACAGGCCACCTTCAAAT
R:
CCGTCCACGTCCTCTGACATA
Band lengths:
255-410
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: