BtaEX6049649 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000001146 | HIVEP2
Description
human immunodeficiency virus type I enhancer binding protein 2 [Source:HGNC Symbol;Acc:HGNC:4921]
Coordinates
chr9:81251783-81266493:-
Coord C1 exon
chr9:81261319-81266493
Coord A exon
chr9:81259012-81259166
Coord C2 exon
chr9:81251783-81251958
Length
155 bp
Sequences
Splice sites
3' ss Seq
ATTCTCTCTTTTTCCTGCAGATG
3' ss Score
12.97
5' ss Seq
AGGGTAAGG
5' ss Score
9.16
Exon sequences
Seq C1 exon
AAGAGTCCTCAGATGAGTTGGACATTGATGAGACAGCCTCTGATATGAGCATGAGCCCTCAGACCTCCTCCTTACCACCTGGGGACAGTCAGCTCGAAGAGCAAGGAAAGGGCCAGAAGCTGCCTGCTGGTGTGCTGGTCCACAGGGCCTCAGGCCCAAGTGGGAAAGTGGCGAATTCAACTCTTCTTTTCACGGACATGGTAGATTTCCAGCAGATTCTTCAGTTCCCCAGTCTGCGGACAACAACAACTGTGAGTTGGTGCTTCTTGAATTATACAAAACCCAATTATGTGCAGCAGGCCACCTTCAAATCCTCGGTTTATGCTTCATGGTGCATTAGTTCCTGTAACCCAAACCCATCCGGATTGAACACCAAGACCACACTGGCTCTTCTGAGGTCCAAGCAAAAAATCACTGCAGAAATTTATACTCTGGCTGCGATGCACCGGCCTGGAACTGGCAAACTGACATCGTCAAGTGCTTGGAAGCAGTTTGCTCAG
Seq A exon
ATGAAACCTGATGCGACCTTTTTATTTGGCAGCAAACTAGAAAGGAAACTAGTGGGAAGTATCCTAAAGGAAAGAGGGAAAGGAGATATTCATGGAGATAAGGATATTGGATCCAAGCAAACTGAGCCTATTCGAATTAAAATCTTTGAAGGAGG
Seq C2 exon
ATATAAATCAAATGAAGATTATGTATATGTCAGAGGACGTGGACGTGGAAAGTACATTTGTGAAGAATGTGGGATTCGCTGTAAGAAACCGAGCATGCTCAAAAAGCATATCCGCACGCATACTGATGTCCGGCCTTATGTATGCAAGTTATGTAACTTCGCCTTCAAAACAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000001146-'5-5,'5-4,6-5=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.660 A=0.115 C2=0.000
Domain overlap (PFAM):
C1:
PF134651=zf-H2C2_2=WD(100=1.5)
A:
NO
C2:
PF134651=zf-H2C2_2=WD(100=43.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAAGACCACACTGGCTCTTC
R:
CAGTATGCGTGCGGATATGCT
Band lengths:
253-408
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]