GgaEX1028732 @ galGal4
Exon Skipping
Gene
ENSGALG00000013795 | HIVEP2
Description
human immunodeficiency virus type I enhancer binding protein 2 [Source:HGNC Symbol;Acc:HGNC:4921]
Coordinates
chr3:52033738-52043212:+
Coord C1 exon
chr3:52033738-52037095
Coord A exon
chr3:52037843-52037997
Coord C2 exon
chr3:52043037-52043212
Length
155 bp
Sequences
Splice sites
3' ss Seq
TCCTTGCCTTTGTTCTGCAGATG
3' ss Score
10.97
5' ss Seq
AGGGTAAGA
5' ss Score
9.21
Exon sequences
Seq C1 exon
GAGAATCTCCAGAAGAACTGGATGTTGATGAAACAGCCTCAGATATGAGCATGAGTCCACAGAGGTCTTCATTGCCACCAGGAGAAATTCAGCCAGAAGACCAACTGAAACATCCAAAATTGCCTCTTGGAATGCTAGTCCAGATGACATCGAGTACCAGTGGGAAAGTCACGGGCTCAACTATTCTCCTGACAGATGTAGCAGATTTTCAGCAGATCCTTCAGTTCCCAAGTCTGCGCACTACTACTACTGTGAGCTGGTGTTTCTTAAACTATACGAAGCCCAATTACATTCAGCAACCAACTCTCAAATCTTCTGTTTATGCTTCATGGTGTATAAGTTCATGTAACCCAAATCCATCTGGGCTAAGTACAAAGACCACATTAGCACTTTTAAGGTCCAAGCAAAAAAACACCACGGAAATCTACACCCTGGCTGCTATGCACAGACCTGGAGCTGGTAAACTGACTTCATCAAGTGCATGGAAGCAACTTGCTCAG
Seq A exon
ATGAAACATGAGCCATTCTTCTTGTTTGGCAGCAAGCTTGAAAAGAAAGTAGTGGGGAATATTATAAAAGAAAGAGTAAAAGGAGACATTCATGGAGATAAAGACATTACATCCAAACAAACCGAGCCGATACGAATTAAAATCTTTGAAGGAGG
Seq C2 exon
GTATAAATCAAATGAGGATTATGTATATGTCAGAGGACGTGGCCGAGGAAAGTATATTTGTGAAGAATGTGGAATTCGCTGCAAAAAGCCAAGCATGCTAAAAAAACATATCCGCACTCATACTGACGTCCGGCCTTATGTATGCAAGTTGTGCAATTTTGCCTTCAAAACTAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000013795-'2-4,'2-3,3-4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.588 A=0.096 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF134651=zf-H2C2_2=WD(100=43.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTAACCCAAATCCATCTGGGC
R:
AGCATGCTTGGCTTTTTGCAG
Band lengths:
255-410
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]