HsaEX6049694 @ hg19
Exon Skipping
Gene
ENSG00000010818 | HIVEP2
Description
human immunodeficiency virus type I enhancer binding protein 2 [Source:HGNC Symbol;Acc:4921]
Coordinates
chr6:143085936-143096262:-
Coord C1 exon
chr6:143090689-143096262
Coord A exon
chr6:143089519-143089673
Coord C2 exon
chr6:143085936-143086111
Length
155 bp
Sequences
Splice sites
3' ss Seq
TCTCTCTTCTTGTCTTACAGATG
3' ss Score
12.87
5' ss Seq
AGGGTAAGG
5' ss Score
9.16
Exon sequences
Seq C1 exon
AAGAATCTTCAGATGAATTAGATATCGATGAGACGGCATCGGACATGAGCATGAGCCCACAGAGTTCTTCATTACCAGCAGGAGATGGTCAGCTGGAAGAGGAAGGGAAGGGCCACAAGCGGCCTGTTGGCATGCTGGTCCGCATGGCCTCTGCCCCCAGCGGGAACGTGGCAGACTCAACTCTTCTTCTCACGGACATGGCAGATTTCCAGCAGATTCTTCAGTTCCCCAGTCTGCGGACAACAACTACTGTGAGTTGGTGCTTCTTGAATTATACAAAACCCAATTATGTGCAACAGGCCACCTTCAAATCCTCGGTTTATGCTTCATGGTGCATTAGTTCCTGTAATCCAAACCCATCAGGATTGAACACCAAGACCACGCTGGCTCTTCTGAGGTCCAAGCAAAAAATCACTGCAGAAATTTATACTCTGGCTGCTATGCATAGGCCTGGAACCGGCAAGCTTACATCATCAAGTGCTTGGAAGCAGTTTACTCAG
Seq A exon
ATGAAACCTGATGCGTCCTTTTTATTTGGCAGCAAACTAGAAAGGAAACTAGTGGGAAATATCTTAAAGGAAAGAGGGAAAGGAGATATTCATGGAGATAAAGATATTGGATCCAAACAAACTGAGCCAATCCGAATTAAAATATTTGAAGGAGG
Seq C2 exon
GTACAAATCGAATGAAGATTATGTATATGTCAGAGGACGTGGCCGGGGAAAGTACATTTGTGAAGAATGTGGGATTCGCTGTAAGAAGCCAAGCATGCTCAAAAAACACATCCGTACCCATACTGATGTTCGGCCTTATGTATGCAAGTTATGTAACTTTGCCTTCAAAACGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000010818-'8-8,'8-7,9-8=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.652 A=0.115 C2=0.000
Domain overlap (PFAM):
C1:
PF134651=zf-H2C2_2=WD(100=1.5)
A:
NO
C2:
PF134651=zf-H2C2_2=WD(100=43.3)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTCTTCTGAGGTCCAAGCAA
R:
AGGCCGAACATCAGTATGGGT
Band lengths:
250-405
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)