RnoEX0041989 @ rn6
Exon Skipping
Gene
ENSRNOG00000011015 | Hivep2
Description
human immunodeficiency virus type I enhancer binding protein 2 [Source:RGD Symbol;Acc:61988]
Coordinates
chr1:8311385-8322220:+
Coord C1 exon
chr1:8311385-8316932
Coord A exon
chr1:8317831-8317985
Coord C2 exon
chr1:8322045-8322220
Length
155 bp
Sequences
Splice sites
3' ss Seq
TCTCTCTTCTGATCTTGCAGATG
3' ss Score
12.1
5' ss Seq
GGGGTAAGG
5' ss Score
8.05
Exon sequences
Seq C1 exon
GAGAGTCCTCCGATGAGCTGGACATCGATGAGACCTCGTCAGACATGAGCATGAGCCCCCAGAGCTCTTCGCTGCCCACAGGAGGCAGTCAGCAGGAAGACGAAGGGAAGGCCCGCAAGCTGCCAGTCAGCATGCTAGTCCACATGGCCTCTGGTCCGGGAGGAAATGTGGCAAATTCCACTCTTCTTTTCACAGACGTGGCAGATTTCCAGCAGATCCTTCAGTTCCCCAGTCTGCGGACAACAACTACTGTGAGTTGGTGCTTCTTAAATTATACAAAACCCAATTTTGTGCAACAGGCCACCTTCAAATCCTCCGTTTATGCTTCATGGTGCATTAGTTCCTGTAACCCAAACCCATCAGGATTGAACACCAAGACCACGCTGGCCCTCCTGAGATCCAAACAAAAAATTACCGCAGAAATTTACACTCTGGCTGCTATGCACAGGCCCGGAACTGGCAAGCTCACATCATCCAGTGCCTGGAAGCAGTTTGCACAG
Seq A exon
ATGAAACCTGATGCACCCTTCTTGTTTGGCAACAAACTAGAAAGGAAATTAGGGGGAAATGTCTTAAAGGAAAGAGGGAAAGGAGAGATTCACGGAGATAAAGATCTTGGATCCAAACAAACCGAGCCAATCCGAATTAAGATCTTTGAAGGGGG
Seq C2 exon
GTACAAATCCAATGAAGATTATGTGTATGTCAGAGGACGTGGACGGGGAAAGTACATTTGTGAAGAGTGTGGAATTCGCTGTAAGAAGCCAAGCATGCTGAAAAAACATATACGCACTCATACTGATGTTCGGCCTTATGTATGCAAGTTATGTAATTTTGCCTTCAAGACGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000011015-'9-10,'9-9,10-10
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.697 A=0.231 C2=0.000
Domain overlap (PFAM):
C1:
PF134651=zf-H2C2_2=WD(100=1.5)
A:
NO
C2:
PF134651=zf-H2C2_2=WD(100=43.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCAACAGGCCACCTTCAAAT
R:
CCGTCCACGTCCTCTGACATA
Band lengths:
255-410
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]