DreEX6072581 @ danRer10
Exon Skipping
Gene
ENSDARG00000075928 | hivep3a
Description
human immunodeficiency virus type I enhancer binding protein 3a [Source:ZFIN;Acc:ZDB-GENE-081029-2]
Coordinates
chr19:15411053-15430998:-
Coord C1 exon
chr19:15426881-15430998
Coord A exon
chr19:15424393-15424532
Coord C2 exon
chr19:15411053-15411228
Length
140 bp
Sequences
Splice sites
3' ss Seq
CGTGTCTCTCTCGAGTGTAGGTA
3' ss Score
6.84
5' ss Seq
AGGGTAAGT
5' ss Score
10.45
Exon sequences
Seq C1 exon
GATCTGATTCAGTAAGTGTTGGAGCAACCAAACGTGTCCTGTCGCCCACAAGCAGTAATGAACTCAACCCAGAAAGTGAACAACAGCAGAAACGAGTAAAAGAGGAGGAAGAAAACCAGGAAAATGAAAGGAGAGATGATAAGGTTTTGATTGAATTCAAAAAGGAGGAAATACTGGGTGAGCAAAGTGTCATCTTCCCAACTGAACACAAAGATCCCCCATTTCAGACTCTTAACACGAATCTAACTTTTAGCTGGTGCTTTCTAAACTACATAAAGCCAAATCCATCCATACAGAGTGAACAACAAAACTCAGTCTATTCTTCATGGTGTACAAGTACCCGCAATCCAAACCCTCCTGGCCTAACAAGCAAGGAAATGCTTTCCCTGTTGCAATGCAGGCAGAGACATGAAACACTTCTCTACACCATGGCATCCATGTCACCTTCTTTGGATGTGAAACAAGAGACACCTGACTCCCAAAAGCCTAACGTGACTGAG
Seq A exon
GTACATGCCGCTCAGCTCACAGAACCGAAAGAAGCCCAGCAAGCTGAGTTGACGGAGGTAGAAACAAAAACAACGGAGGAGAAGGAAGACCAGTTATCTACCTCCAAATGCAGCTCACGGGTACAGATTTGTGAGGGAGG
Seq C2 exon
CTACAGGTCAAGTGAGGAATATGTGTATGTACGTGGACGAGGAAGAGGTCGATATGTATGTGAAGAGTGTGGAATACGCTGTAAGAAACCAAGCATGCTGCGCAAACACATACGACTCCACACGGACGCCCGACCTTATGTCTGCCAGCACTGTAACTTTGCCTTCAAAACCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000075928-'4-7,'4-6,5-7=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.710 A=0.702 C2=0.000
Domain overlap (PFAM):
C1:
PF134651=zf-H2C2_2=WD(100=2.1)
A:
NO
C2:
PF134651=zf-H2C2_2=WD(100=43.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTTTCCCTGTTGCAATGCAG
R:
TCCGTGTGGAGTCGTATGTGT
Band lengths:
247-387
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]