DreEX0037675 @ danRer10
Exon Skipping
Gene
ENSDARG00000037154 | hivep3b
Description
human immunodeficiency virus type I enhancer binding protein 3b [Source:ZFIN;Acc:ZDB-GENE-100922-42]
Coordinates
chr16:34377119-34384005:-
Coord C1 exon
chr16:34383860-34384005
Coord A exon
chr16:34377305-34377480
Coord C2 exon
chr16:34377119-34377214
Length
176 bp
Sequences
Splice sites
3' ss Seq
TGTCTGTCTTACCTGAACAGGTA
3' ss Score
10.92
5' ss Seq
AAGGTAGAC
5' ss Score
7.07
Exon sequences
Seq C1 exon
GTACATGCCTCACCACCCAGCACCCCCGTCAAAGTAAAAGAGGAACCAACAAGTGAAAGTAGGGACAAAGATAAGGAGAGTGCTGATGACATGCCAGCTACCTCGACTCAAAATGAGGCAGTACGTGTTTGCATTTTTGAGGGCGG
Seq A exon
GTATAAGTCAAACGAGGATTATGTGTATGTTCGTGGAAGGGGAAGAGGCAAGTACGTGTGTGGTGAATGTGGGATTCGCTGTAAGAAGCCCAGCATGTTAAAAAAGCACATTCGCACTCATACAGATCTGCGTCCGTATGTCTGCAAGTACTGCAACTTCGCCTTTAAAACCAAAG
Seq C2 exon
GGAACCTTACCAAACACATGAAGTCTAAGGCTCATGGTAAGAAATGCCTGGAGATGGGAGCATCCGAGTCCTCTGAGCTGGACCCTGAGGAAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000037154_MULTIEX1-1/2=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.776 A=0.000 C2=0.530
Domain overlap (PFAM):
C1:
NO
A:
PF134651=zf-H2C2_2=WD(100=43.3)
C2:
NO
Main Skipping Isoform:
ENSDART00000054020fB3162
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTACATGCCTCACCACCCAG
R:
CTGCTTCCTCAGGGTCCAGC
Band lengths:
242-418
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]