GgaEX1028733 @ galGal3
Exon Skipping
Gene
ENSGALG00000013795 | HIVEP2
Description
NA
Coordinates
chr3:54674860-54682903:+
Coord C1 exon
chr3:54674860-54675014
Coord A exon
chr3:54680054-54680229
Coord C2 exon
chr3:54682802-54682903
Length
176 bp
Sequences
Splice sites
3' ss Seq
TACTCATTCTCTTTCAACAGGTA
3' ss Score
10.86
5' ss Seq
AAGGTACTT
5' ss Score
8.4
Exon sequences
Seq C1 exon
ATGAAACATGAGCCATTCTTCTTGTTTGGCAGCAAGCTTGAAAAGAAAGTAGTGGGGAATATTATAAAAGAAAGAGTAAAAGGAGACATTCATGGAGATAAAGACATTACATCCAAACAAACCGAGCCGATACGAATTAAAATCTTTGAAGGAGG
Seq A exon
GTATAAATCAAATGAGGATTATGTATATGTCAGAGGACGTGGCCGAGGAAAGTATATTTGTGAAGAATGTGGAATTCGCTGCAAAAAGCCAAGCATGCTAAAAAAACATATCCGCACTCATACTGACGTCCGGCCTTATGTATGCAAGTTGTGCAATTTTGCCTTCAAAACTAAAG
Seq C2 exon
GAAATCTGACAAAACATATGAAGTCTAAAGCACACATGAAAAAATGCCTGGAGCTTGGAGTATCAATGACATCTGTAGACGATGCTGAAACTGAAGAAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000013795-'4-6,'4-5,5-6=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.096 A=0.000 C2=0.400
Domain overlap (PFAM):
C1:
NO
A:
PF134651=zf-H2C2_2=WD(100=43.3)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCATTCTTCTTGTTTGGCAGC
R:
TGCTTCTTCAGTTTCAGCATCGT
Band lengths:
245-421
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]