DreEX6046659 @ danRer10
Exon Skipping
Gene
ENSDARG00000039987 | hivep2a
Description
human immunodeficiency virus type I enhancer binding protein 2a [Source:ZFIN;Acc:ZDB-GENE-041014-354]
Coordinates
chr20:37613471-37614611:-
Coord C1 exon
chr20:37614460-37614611
Coord A exon
chr20:37613792-37613967
Coord C2 exon
chr20:37613471-37613572
Length
176 bp
Sequences
Splice sites
3' ss Seq
TAAAACATGTTTTATTTCAGGTA
3' ss Score
9.09
5' ss Seq
AAGGTTGGT
5' ss Score
8.46
Exon sequences
Seq C1 exon
TTGAAGCCAGAGCATATACAGTTGGATGTTGGGAAGTTTGCAAAGAAAATGAAGGGAATCAGCTCAAGAGACAGGGGGAAAGAGGACCATGGAGAAAAAGAGGCTTGTTCAAAACAGGCTGAACCCACTCGCATCAAAATCTTTGAAGGAGG
Seq A exon
GTACAAATCCAATGAAGACTATGTTTATGTGCGTGGCCGAGGCCGGGGAAAGTACATCTGCGAGGAGTGCGGGATCCGCTGTAAAAAACCAAGCATGCTGAAAAAACATATTCGCACACACACAGATGTCAGGCCATATGTCTGCAAGTTCTGCAACTTTGCTTTTAAAACAAAAG
Seq C2 exon
GAAATCTTACAAAACACATGAAGTCAAAAGCTCACATGAAAAAGTGCTTGGAGCTTGGAGTATCAGTGACTTCGGTGGATGAAACAGAGGCAGAAGAACTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000039987-'11-10,'11-9,12-10=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.373 A=0.000 C2=0.257
Domain overlap (PFAM):
C1:
NO
A:
PF134651=zf-H2C2_2=WD(100=43.3)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAAGCCAGAGCATATACAGTTGG
R:
CTGCCTCTGTTTCATCCACCG
Band lengths:
244-420
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]