MmuEX0022958 @ mm9
Exon Skipping
Gene
ENSMUSG00000015501 | Hivep2
Description
human immunodeficiency virus type I enhancer binding protein 2 [Source:MGI Symbol;Acc:MGI:1338076]
Coordinates
chr10:13853546-13862148:+
Coord C1 exon
chr10:13853546-13853700
Coord A exon
chr10:13859191-13859366
Coord C2 exon
chr10:13862047-13862148
Length
176 bp
Sequences
Splice sites
3' ss Seq
TCTGCCTCTTCTTCAAATAGGTA
3' ss Score
10.77
5' ss Seq
AAGGTATGA
5' ss Score
9.11
Exon sequences
Seq C1 exon
ATGAAGCCTGATGCGCCCTTCTTGTTTGGCAACAAACTAGAAAGGAAATTAGCAGGAAATGTCCTAAAGGAAAGAGGGAAAGGAGAGATTCACGGAGATAAAGATCTTGGATCCAAACAAACTGAGCCAATCCGAATTAAGATCTTTGAAGGGGG
Seq A exon
GTACAAATCCAATGAAGATTATGTGTATGTCAGAGGACGTGGACGGGGAAAGTATATTTGTGAAGAGTGTGGAATTCGCTGTAAGAAGCCAAGTATGCTCAAAAAACACATACGCACTCATACTGATGTTCGGCCTTATGTATGCAAGTTATGTAATTTTGCCTTCAAAACGAAAG
Seq C2 exon
GAAACCTAACAAAACACATGAAATCTAAGGCCCACATGAAAAAGTGTCTGGAGCTGGGCGTGTCGATGACATCAGTAGATGACACAGAAACAGAAGAAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000015501_MULTIEX1-9/11=8-10
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.192 A=0.000 C2=0.400
Domain overlap (PFAM):
C1:
NO
A:
PF134651=zf-H2C2_2=WD(100=43.3)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTGATGCGCCCTTCTTGTTT
R:
TGCTTCTTCTGTTTCTGTGTCA
Band lengths:
250-426
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: