HsaEX6049695 @ hg19
Exon Skipping
Gene
ENSG00000010818 | HIVEP2
Description
human immunodeficiency virus type I enhancer binding protein 2 [Source:HGNC Symbol;Acc:4921]
Coordinates
chr6:143082601-143089673:-
Coord C1 exon
chr6:143089519-143089673
Coord A exon
chr6:143085936-143086111
Coord C2 exon
chr6:143082601-143082702
Length
176 bp
Sequences
Splice sites
3' ss Seq
ATTCCCTCTTTTTAAAACAGGTA
3' ss Score
9.25
5' ss Seq
AAGGTACAA
5' ss Score
6.82
Exon sequences
Seq C1 exon
ATGAAACCTGATGCGTCCTTTTTATTTGGCAGCAAACTAGAAAGGAAACTAGTGGGAAATATCTTAAAGGAAAGAGGGAAAGGAGATATTCATGGAGATAAAGATATTGGATCCAAACAAACTGAGCCAATCCGAATTAAAATATTTGAAGGAGG
Seq A exon
GTACAAATCGAATGAAGATTATGTATATGTCAGAGGACGTGGCCGGGGAAAGTACATTTGTGAAGAATGTGGGATTCGCTGTAAGAAGCCAAGCATGCTCAAAAAACACATCCGTACCCATACTGATGTTCGGCCTTATGTATGCAAGTTATGTAACTTTGCCTTCAAAACGAAAG
Seq C2 exon
GAAACCTAACGAAGCATATGAAATCTAAAGCACACATGAAAAAATGCCTGGAATTGGGAGTCTCAATGACATCGGTGGATGATACAGAAACTGAGGAAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000010818-'9-9,'9-8,10-9=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.115 A=0.000 C2=0.400
Domain overlap (PFAM):
C1:
NO
A:
PF134651=zf-H2C2_2=WD(100=43.3)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAAACCTGATGCGTCCTTTT
R:
CCTCAGTTTCTGTATCATCCACCG
Band lengths:
250-426
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)