MmuEX0022958 @ mm10
Exon Skipping
Gene
ENSMUSG00000015501 | Hivep2
Description
human immunodeficiency virus type I enhancer binding protein 2 [Source:MGI Symbol;Acc:MGI:1338076]
Coordinates
chr10:14133740-14142342:+
Coord C1 exon
chr10:14133740-14133894
Coord A exon
chr10:14139385-14139476
Coord C2 exon
chr10:14142241-14142342
Length
92 bp
Sequences
Splice sites
3' ss Seq
TCTGCCTCTTCTTCAAATAGGTA
3' ss Score
10.77
5' ss Seq
CAAGTATGC
5' ss Score
5.38
Exon sequences
Seq C1 exon
ATGAAGCCTGATGCGCCCTTCTTGTTTGGCAACAAACTAGAAAGGAAATTAGCAGGAAATGTCCTAAAGGAAAGAGGGAAAGGAGAGATTCACGGAGATAAAGATCTTGGATCCAAACAAACTGAGCCAATCCGAATTAAGATCTTTGAAGGGGG
Seq A exon
GTACAAATCCAATGAAGATTATGTGTATGTCAGAGGACGTGGACGGGGAAAGTATATTTGTGAAGAGTGTGGAATTCGCTGTAAGAAGCCAA
Seq C2 exon
GAAACCTAACAAAACACATGAAATCTAAGGCCCACATGAAAAAGTGTCTGGAGCTGGGCGTGTCGATGACATCAGTAGATGACACAGAAACAGAAGAAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000015501_MULTIEX1-13/15=12-14
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.192 A=0.000 C2=0.400
Domain overlap (PFAM):
C1:
NO
A:
PF134651=zf-H2C2_2=WD(100=43.3)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGATGCGCCCTTCTTGTTTGG
R:
TGTGGGCCTTAGATTTCATGTGT
Band lengths:
183-275
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types