BtaEX6049650 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000001146 | HIVEP2
Description
human immunodeficiency virus type I enhancer binding protein 2 [Source:HGNC Symbol;Acc:HGNC:4921]
Coordinates
chr9:81246872-81259166:-
Coord C1 exon
chr9:81259012-81259166
Coord A exon
chr9:81251783-81251958
Coord C2 exon
chr9:81246872-81246973
Length
176 bp
Sequences
Splice sites
3' ss Seq
GATTTTCCCTCTTTTAACAGATA
3' ss Score
10.6
5' ss Seq
AAGGTACAG
5' ss Score
8.04
Exon sequences
Seq C1 exon
ATGAAACCTGATGCGACCTTTTTATTTGGCAGCAAACTAGAAAGGAAACTAGTGGGAAGTATCCTAAAGGAAAGAGGGAAAGGAGATATTCATGGAGATAAGGATATTGGATCCAAGCAAACTGAGCCTATTCGAATTAAAATCTTTGAAGGAGG
Seq A exon
ATATAAATCAAATGAAGATTATGTATATGTCAGAGGACGTGGACGTGGAAAGTACATTTGTGAAGAATGTGGGATTCGCTGTAAGAAACCGAGCATGCTCAAAAAGCATATCCGCACGCATACTGATGTCCGGCCTTATGTATGCAAGTTATGTAACTTCGCCTTCAAAACAAAAG
Seq C2 exon
GAAACCTAACGAAGCATATGAAATCTAAAGCACACATGAAGAAATGCCTGGAGTTGGGAGTCTCAATGACATCAGTCGATGACACCGAAACCGAGGAAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000001146-'6-6,'6-5,7-6=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.115 A=0.000 C2=0.400
Domain overlap (PFAM):
C1:
NO
A:
PF134651=zf-H2C2_2=WD(100=43.3)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCGACCTTTTTATTTGGCAGCA
R:
CTTCCTCGGTTTCGGTGTCAT
Band lengths:
242-418
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]