RnoEX6000129 @ rn6
Exon Skipping
Gene
ENSRNOG00000011015 | Hivep2
Description
human immunodeficiency virus type I enhancer binding protein 2 [Source:RGD Symbol;Acc:61988]
Coordinates
chr1:8317831-8324751:+
Coord C1 exon
chr1:8317831-8317985
Coord A exon
chr1:8322045-8322220
Coord C2 exon
chr1:8324650-8324751
Length
176 bp
Sequences
Splice sites
3' ss Seq
TTTGCTTCTTCTTCAAATAGGTA
3' ss Score
10.16
5' ss Seq
AAGGTATGG
5' ss Score
9.26
Exon sequences
Seq C1 exon
ATGAAACCTGATGCACCCTTCTTGTTTGGCAACAAACTAGAAAGGAAATTAGGGGGAAATGTCTTAAAGGAAAGAGGGAAAGGAGAGATTCACGGAGATAAAGATCTTGGATCCAAACAAACCGAGCCAATCCGAATTAAGATCTTTGAAGGGGG
Seq A exon
GTACAAATCCAATGAAGATTATGTGTATGTCAGAGGACGTGGACGGGGAAAGTACATTTGTGAAGAGTGTGGAATTCGCTGTAAGAAGCCAAGCATGCTGAAAAAACATATACGCACTCATACTGATGTTCGGCCTTATGTATGCAAGTTATGTAATTTTGCCTTCAAGACGAAAG
Seq C2 exon
GAAACCTAACGAAACACATGAAATCTAAGGCCCACATGAAAAAGTGTCTGGAGCTGGGCGTCTCGATGACATCAGTAGATGAGACAGAAACAGAAGAAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000011015-'10-11,'10-10,11-11=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.231 A=0.000 C2=0.400
Domain overlap (PFAM):
C1:
NO
A:
PF134651=zf-H2C2_2=WD(100=43.3)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGCACCCTTCTTGTTTGGCA
R:
CTGCTTCTTCTGTTTCTGTCTCA
Band lengths:
247-423
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]