GgaEX1028733 @ galGal4
Exon Skipping
Gene
ENSGALG00000013795 | HIVEP2
Description
human immunodeficiency virus type I enhancer binding protein 2 [Source:HGNC Symbol;Acc:HGNC:4921]
Coordinates
chr3:52037843-52045886:+
Coord C1 exon
chr3:52037843-52037997
Coord A exon
chr3:52043037-52043212
Coord C2 exon
chr3:52045785-52045886
Length
176 bp
Sequences
Splice sites
3' ss Seq
TACTCATTCTCTTTCAACAGGTA
3' ss Score
10.86
5' ss Seq
AAGGTACTT
5' ss Score
8.4
Exon sequences
Seq C1 exon
ATGAAACATGAGCCATTCTTCTTGTTTGGCAGCAAGCTTGAAAAGAAAGTAGTGGGGAATATTATAAAAGAAAGAGTAAAAGGAGACATTCATGGAGATAAAGACATTACATCCAAACAAACCGAGCCGATACGAATTAAAATCTTTGAAGGAGG
Seq A exon
GTATAAATCAAATGAGGATTATGTATATGTCAGAGGACGTGGCCGAGGAAAGTATATTTGTGAAGAATGTGGAATTCGCTGCAAAAAGCCAAGCATGCTAAAAAAACATATCCGCACTCATACTGACGTCCGGCCTTATGTATGCAAGTTGTGCAATTTTGCCTTCAAAACTAAAG
Seq C2 exon
GAAATCTGACAAAACATATGAAGTCTAAAGCACACATGAAAAAATGCCTGGAGCTTGGAGTATCAATGACATCTGTAGACGATGCTGAAACTGAAGAAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000013795-'3-6,'3-4,4-6
Average complexity
S
Mappability confidence:
89%=100=80%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.096 A=0.000 C2=0.400
Domain overlap (PFAM):
C1:
NO
A:
PF134651=zf-H2C2_2=WD(100=43.3)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCATTCTTCTTGTTTGGCAGC
R:
TGCTTCTTCAGTTTCAGCATCGT
Band lengths:
245-421
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]