RnoEX0041992 @ rn6
Exon Skipping
Gene
ENSRNOG00000009341 | Hivep3
Description
human immunodeficiency virus type I enhancer binding protein 3 [Source:RGD Symbol;Acc:1311252]
Coordinates
chr5:139047350-139067823:+
Coord C1 exon
chr5:139047350-139047483
Coord A exon
chr5:139062457-139062632
Coord C2 exon
chr5:139067737-139067823
Length
176 bp
Sequences
Splice sites
3' ss Seq
ATGACACCTGTTGCTCACAGGTA
3' ss Score
7.49
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
Exon sequences
Seq C1 exon
GTGCACCTCCCGTCGATGGTTTCCCTGGAGAGCCAGAAAGACCCAGCTAGAGTGGAGAAGGAAGAAAAGGCAGAGGAAGGTACTCCAACTTCCAAGAGAGGCGAGCCGACGAGGGTCAAGATCTTCGAAGGAGG
Seq A exon
GTACAAATCAAACGAGGAGTATATATATGTGCGAGGCCGCGGCCGAGGGAAGTATGTCTGTGAGGAGTGTGGAATTCGCTGCAAGAAACCCAGCATGCTGAAGAAACACATCCGCACCCACACTGACGTCCGACCCTATGTGTGCAGGCACTGTCACTTTGCTTTTAAAACCAAAG
Seq C2 exon
GGAATCTGACTAAGCACATGAAGTCGAAAGCCCACAGCAAAAAGTGCCAAGAGACGGGGGTGCTGGAGGAGCTGGAAGCCGAAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000009341_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.933 A=0.067 C2=0.800
Domain overlap (PFAM):
C1:
NO
A:
PF0009621=zf-C2H2=WD(100=38.3),PF0009621=zf-C2H2=PU(52.0=21.7)
C2:
PF0009621=zf-C2H2=PD(44.0=36.7)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACCTCCCGTCGATGGTTTC
R:
CTTCTTCGGCTTCCAGCTCCT
Band lengths:
218-394
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]