GgaEX0000588 @ galGal3
Exon Skipping
Gene
ENSGALG00000000635 | HIVEP3
Description
NA
Coordinates
chr23:851692-887884:+
Coord C1 exon
chr23:851692-851837
Coord A exon
chr23:880218-880393
Coord C2 exon
chr23:887786-887884
Length
176 bp
Sequences
Splice sites
3' ss Seq
ATGACACCTGTTGCTCATAGGTA
3' ss Score
6.62
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
Exon sequences
Seq C1 exon
GTTCATTTGCCTTCGCTCCTTTCTAATGAAGGTCGAAAAGAAATAACTAGAGCTGAGAAGGAAGAGGATAAAAGAGGAAAACCAGAAGAAGAGGCTGTTGTAACCAAAAGAGGGGAGCCAGTCAGGATCAAGATCTTTGAAGGAGG
Seq A exon
GTACAAATCAAACGAAGAGTATGTGTATGTGCGAGGCCGTGGAAGAGGGAAGTATGTATGTGAGGAGTGTGGAATTCGCTGCAAGAAACCCAGCATGCTGAAGAAACACTTTCGCACGCACACAGACGTCAGGCCATATGTCTGCAAGTACTGTAACTTTGCTTTTAAAACCAAAG
Seq C2 exon
GGAATCTGACTAAGCATATGAAGTCAAAAGCCCACAGCAAAAAATGTCAGGAGATGGGCGTGTTGGTATCTTCACTGGTGGATCTGGAAGCCGAAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000635_CASSETTE1
Average complexity
S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence exclusion
Show structural model
Features
Disorder rate (Iupred):
C1=0.571 A=0.000 C2=0.412
Domain overlap (PFAM):
C1:
NO
A:
PF065247=NOA36=PU(38.2=96.7),PF053276=RRN3=PU(18.2=48.3),PF134651=zf-H2C2_2=WD(100=43.3)
C2:
PF065247=NOA36=FE(21.7=100),PF053276=RRN3=FE(20.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCATTTGCCTTCGCTCCTTTCT
R:
TTCTTCGGCTTCCAGATCCAC
Band lengths:
242-418
Functional annotations
There are 0 annotated functions for this event