GgaEX0000588 @ galGal4
Exon Skipping
Gene
ENSGALG00000027365 | HIVEP3
Description
human immunodeficiency virus type I enhancer binding protein 3 [Source:HGNC Symbol;Acc:HGNC:13561]
Coordinates
chr23:869979-906171:+
Coord C1 exon
chr23:869979-870124
Coord A exon
chr23:898505-898680
Coord C2 exon
chr23:906073-906171
Length
176 bp
Sequences
Splice sites
3' ss Seq
ATGACACCTGTTGCTCATAGGTA
3' ss Score
6.62
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
Exon sequences
Seq C1 exon
GTTCATTTGCCTTCGCTCCTTTCTAATGAAGGTCGAAAAGAAATAACTAGAGCTGAGAAGGAAGAGGATAAAAGAGGAAAACCAGAAGAAGAGGCTGTTGTAACCAAAAGAGGGGAGCCAGTCAGGATCAAGATCTTTGAAGGAGG
Seq A exon
GTACAAATCAAACGAAGAGTATGTGTATGTGCGAGGCCGTGGAAGAGGGAAGTATGTATGTGAGGAGTGTGGAATTCGCTGCAAGAAACCCAGCATGCTGAAGAAACACATTCGCACGCACACAGACGTCAGGCCATATGTCTGCAAGTACTGTAACTTTGCTTTTAAAACCAAAG
Seq C2 exon
GGAATCTGACTAAGCATATGAAGTCAAAAGCCCACAGCAAAAAATGTCAGGAGATGGGCGTGTTGGTATCTTCACTGGTGGATCTGGAAGCCGAAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000027365_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
Show structural model
Features
Disorder rate (Iupred):
C1=0.571 A=0.033 C2=0.441
Domain overlap (PFAM):
C1:
NO
A:
PF134651=zf-H2C2_2=WD(100=43.3)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCATTTGCCTTCGCTCCTTTCT
R:
TTCTTCGGCTTCCAGATCCAC
Band lengths:
242-418
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]