DreEX0037694 @ danRer10
Exon Skipping
Gene
ENSDARG00000101482 | hk2
Description
hexokinase 2 [Source:ZFIN;Acc:ZDB-GENE-040426-2017]
Coordinates
chr5:13430341-13457378:+
Coord C1 exon
chr5:13430341-13430502
Coord A exon
chr5:13450092-13450325
Coord C2 exon
chr5:13457074-13457378
Length
234 bp
Sequences
Splice sites
3' ss Seq
CTCTTCTTTCTCTTCTACAGGGA
3' ss Score
12.27
5' ss Seq
AGAGTAAGT
5' ss Score
9.35
Exon sequences
Seq C1 exon
ATTCGAGAAGATGATTAGTGGGATGTACATGGGCGAGCTGGTCAGACTCATCCTGGTGAAGATGGCCAAAGATGGGCTGCTCTTCCAGGGTCACACCACGCCAGATCTGCTCACCACCGGACACTTCCAGACTTCCTTCGTCTCTGCCATTGAAAATAGGAA
Seq A exon
GGATGATGAGGGTATAGTGAGTGCAGAGCAGGTGTTGAGAGGGCTTGGACTGGACCCGACACCTGAAGACTGTGTAGCCACCCAGCGAGTGTGTCAGATTGTGTCCACGCGAGCTGCTCATCTCTGTGCTGCTTCACTAGCGGCTGTGCTACGGCAGATCCGTGATAACAAAGCCTCAGACAGATTGCGCACCTCTATCGGCGTGGATGGATCAGTCTACAAAAACCACCCAGA
Seq C2 exon
GTTTGCTCGGCGTCTGAATAAGATGGTGAGGTCTTTGGTTCCAGACTGTGACGTGCGTTTCTTGCGCTCTGAGGATGGCAGCGGTAAAGGGGCTGCCATGGTCACTGCAGTGGCATACCGCTTGGCGAAGCAGCATGCAGAACGTCAGCGTGTTCTGGACACACTGCGTCTCGGTCGAGATCAGCTCCTGGAGGTGAAGAAAAGGATGGAGGAGGAAATGAAACGAGGCCTGGCTAAAAAAACACACAACAACGCCACCGTCAAAATGCTGCCCACCTTCGTGCGCTCCACACCAGATGGAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000101482_MULTIEX1-7/12=6-8
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.175
Domain overlap (PFAM):
C1:
PF0372711=Hexokinase_2=FE(22.3=100)
A:
PF0372711=Hexokinase_2=FE(32.2=100)
C2:
PF0372711=Hexokinase_2=PD(16.5=38.8),PF0034916=Hexokinase_1=PU(29.1=58.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGACTTCCTTCGTCTCTGCCA
R:
GGTGGCGTTGTTGTGTGTTTT
Band lengths:
293-527
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]