MmuEX6005033 @ mm10
Exon Skipping
Gene
ENSMUSG00000000628 | Hk2
Description
hexokinase 2 [Source:MGI Symbol;Acc:MGI:1315197]
Coordinates
chr6:82736530-82739674:-
Coord C1 exon
chr6:82739519-82739674
Coord A exon
chr6:82738287-82738520
Coord C2 exon
chr6:82736530-82736834
Length
234 bp
Sequences
Splice sites
3' ss Seq
ACACCCTATCTGTTTCCCAGCGA
3' ss Score
7.23
5' ss Seq
CCAGTGAGT
5' ss Score
8.28
Exon sequences
Seq C1 exon
GTTTGAGAAGATGATCAGCGGGATGTACATGGGGGAGCTGGTCAGACTCATCCTGGTGAAGATGGCCAAGGCCGAGCTGCTGTTCCAAGGGAAACTCAGCCCAGAGCTCCTTACCACTGGCTCCTTCGAGACCAAAGATGTCTCGGATATTGAAGA
Seq A exon
CGATAAGGACGGAATTCAGAAGGCCTACCAGATCCTGGTGCGCCTGGGTCTGAGCCCGCTGCAGGAGGACTGTGTGGCCACGCACCGAATCTGCCAGATTGTGTCCACGCGCTCAGCCAGCCTGTGTGCAGCCACCCTGGCCGCGGTGCTGTGGCGGATCAAAGAGAACAAGGGCGAGGAGCGACTCCGCTCCACCATCGGCGTGGATGGCTCTGTCTACAAGAAACATCCCCA
Seq C2 exon
TTTTGCCAAGCGTCTCCATAAGGCAGTGAGGAGGCTGGTGCCCGATTGTGATGTCCGCTTCCTCCGCTCTGAGGATGGCAGCGGCAAGGGGGCGGCTATGGTGACGGCGGTGGCTTACCGTCTGGCTGACCAACACCGGGCCCGCCAGAAGACCCTGGAGTCTCTGAAGCTGAGCCATGAACAGCTGCTGGAGGTTAAGAGAAGGATGAAGGTGGAAATGGAGCAGGGTCTGAGCAAGGAGACGCATGAGGCCGCCCCTGTGAAGATGTTGCCCACTTATGTGTGTGCCACTCCAGACGGTACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000000628-'24-15,'24-14,25-15
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.097
Domain overlap (PFAM):
C1:
PF0372711=Hexokinase_2=FE(21.7=100)
A:
PF0372711=Hexokinase_2=FE(32.5=100)
C2:
PF0372711=Hexokinase_2=PD(16.7=38.8),PF0034916=Hexokinase_1=PU(29.1=58.3)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAGCTGGTCAGACTCATCCT
R:
AGCTTCAGAGACTCCAGGGTC
Band lengths:
294-528
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types