RnoEX6013982 @ rn6
Exon Skipping
Gene
ENSRNOG00000006116 | Hk2
Description
hexokinase 2 [Source:RGD Symbol;Acc:2797]
Coordinates
chr4:113570293-113573301:-
Coord C1 exon
chr4:113573146-113573301
Coord A exon
chr4:113571727-113571960
Coord C2 exon
chr4:113570293-113570597
Length
234 bp
Sequences
Splice sites
3' ss Seq
ACACCCTGTCTGTTTCCCAGGGA
3' ss Score
9.28
5' ss Seq
CCAGTGAGT
5' ss Score
8.28
Exon sequences
Seq C1 exon
GTTTGAGAAGATGATTAGCGGGATGTACATGGGGGAGCTGGTCAGGCTCATCCTGGTGAAGATGGCCAAGGCAGAGCTGTTGTTCCAAGGGAAACTCAGCCCAGAACTCCTTACCACTGGCTCCTTCGAGACCAAAGATGTCTCGGATATTGAAGA
Seq A exon
GGATAAGGATGGAATCGAGAAGGCCTACCAAATCCTGATGCGCCTGGGTCTGAATCCATTGCAGGAGGATTGTGTGGCCACGCACCGAATCTGCCAGATTGTGTCCACGCGCTCGGCCAGTCTGTGCGCAGCCACCCTGGCCGCGGTGCTGTGGCGAATCAAAGAGAACAAGGGCGAGGAGCGACTTCGCTCCACCATCGGTGTCGATGGCTCCGTCTACAAGAAACATCCCCA
Seq C2 exon
TTTTGCCAAGCGTCTCCATAAGGCAGTGAGGAGGCTGGTGCCCGACTGTGATGTCCGCTTCCTCCGCTCTGAGGATGGCAGCGGCAAGGGGGCTGCTATGGTGACGGCGGTGGCTTACCGTCTGGCTGACCAACACCGGGCCCGCCAGAAGACCCTGGAGTCTCTGAAGCTGAGCCACGAGCAGCTTCTGGAGGTTAAGAGAAGAATGAAGGTGGAAATGGAGCAGGGTCTGAGCAAGGAGACGCATGCGGTCGCCCCTGTGAAGATGCTGCCCACTTACGTGTGTGCCACTCCAGATGGCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000006116-'12-13,'12-11,13-13=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.019 A=0.000 C2=0.010
Domain overlap (PFAM):
C1:
PF0372711=Hexokinase_2=FE(21.7=100)
A:
PF0372711=Hexokinase_2=FE(32.5=100)
C2:
PF0372711=Hexokinase_2=PD(16.7=38.8),PF0034916=Hexokinase_1=PU(29.1=58.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTCCAAGGGAAACTCAGCCC
R:
CCCTGCTCCATTTCCACCTTC
Band lengths:
303-537
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]