GgaEX1028749 @ galGal4
Exon Skipping
Gene
ENSGALG00000004222 | HK1
Description
hexokinase-1 [Source:RefSeq peptide;Acc:NP_989432]
Coordinates
chr6:10483581-10491027:+
Coord C1 exon
chr6:10483581-10483680
Coord A exon
chr6:10486093-10486326
Coord C2 exon
chr6:10490844-10491027
Length
234 bp
Sequences
Splice sites
3' ss Seq
TTACTACCCTTTCTTTGTAGGAG
3' ss Score
9.8
5' ss Seq
ACAGTGAGT
5' ss Score
8.34
Exon sequences
Seq C1 exon
GACTATGATGCAGATATCATGGCTGTTGTGAACGATACCGTTGGCACTATGATGACCTGTGGTTTTGATGACCAACGTTGTGAAGTTGGCTTGATCATTG
Seq A exon
GAGCAAAGAAGGTTTGAACAAAGCCAAAGAAATCTTAACCCGCCTGGGGGTGGAGCCGTCCCACGAGGACTGCATCGCAGTCCAGCACGTCTGCACCATCGTGTCCTTCCGCTCGGCCAACCTGGTGGCCTCCACGCTGGGTGCCATCCTCAACCAGCTGCGGGATAACAAAGGGGTTGGCCGCCTCCGCACCACCGTGGGTGTCGATGGCTCCCTCTACAAGATGCATCCACA
Seq C2 exon
GAACTGGCAGCAATGCCTGTTACATGGAGGAGATGAGAAACATAGAGATGGTGGATGGTGAGCAAGGACGGATGTGTGTGAACATGGAGTGGGGAGCTTTCGGGGATAATGGATGCCTGGACGATATCAGGACAATATATGACAAAGCAGTTGATGACTATTCACTAAATGCTGGAAAGCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004222_MULTIEX1-3/8=C1-C2
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0034916=Hexokinase_1=PD(11.2=67.6),PF0372711=Hexokinase_2=PU(3.3=23.5)
A:
PF0372711=Hexokinase_2=FE(32.5=100)
C2:
PF0372711=Hexokinase_2=FE(25.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGATGCAGATATCATGGCTGTTGT
R:
GCTTTCCAGCATTTAGTGAATAGTCA
Band lengths:
276-510
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]