DreEX6061136 @ danRer10
Exon Skipping
Gene
ENSDARG00000039452 | hk1
Description
hexokinase 1 [Source:ZFIN;Acc:ZDB-GENE-040426-2848]
Coordinates
chr13:22849797-22855385:-
Coord C1 exon
chr13:22855230-22855385
Coord A exon
chr13:22852618-22852851
Coord C2 exon
chr13:22849797-22850101
Length
234 bp
Sequences
Splice sites
3' ss Seq
ACTACCATTTTTTCTTCTAGGAG
3' ss Score
10.28
5' ss Seq
ACAGTGAGT
5' ss Score
8.34
Exon sequences
Seq C1 exon
GTTTGAGAAGATGGTGAGTGGGATGTACATGGGTGAGCTGGTGAGGCTGATCCTGGTCAAAATGGCTAAAGAAGGCCTGCTGTTTGAAGGCCGCATCACACCAGAGCTGCTTACAAAAGGAAAAATCGAAACCAAGCACGTTTCTGCAATTGAGAA
Seq A exon
GAGCAAGGAAGGACTAACCAAAGCCAAGGAGATTTTGACACGCTTGGGTGTAGAGCCGTCTGAGGACGACTGCATTGCTGTGCAGCATGTTTGTGCCATTGTCTCTTTTCGCTCTGCTAATCTAATTGCTGCCACTTTGGGTGCAATCCTGACACGTCTGAAGGACAACAAGAACACCCCACGTCTCCGCACTACTGTGGGCATTGATGGCTCCCTATACAAGATGCACCCACA
Seq C2 exon
GTATGCCCGTCGGTTGCACAAAACAGTGCGTCGTCTGGTGCCAGAGTCTGATGTTCGCTTCTTGCTGTCTGAGAGTGGAAGTGGAAAGGGAGCTGCACTGGTGACAGCCTGGGCTTACCGTTTGGCGGACCAGGAGCGTCAAATTGCAGAAACCCTGGAAGAGTTCAGGTTGACCAAAGACCAGCTGCTAGAGGTGAAAAAGAGGATGAGAACTGAGATTCAGAATGGACTGAGCAAGAGCACCCAAAACACAGCCACCGTCAAAATGCTGCCCACATATGTGCGGAGTACCCCTGATGGATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000039452-'9-13,'9-12,10-13=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.013 C2=0.146
Domain overlap (PFAM):
C1:
PF0372711=Hexokinase_2=FE(21.7=100)
A:
PF0372711=Hexokinase_2=FE(32.5=100)
C2:
PF0372711=Hexokinase_2=PD(16.7=38.8),PF0034916=Hexokinase_1=PU(29.1=58.3)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCATCACACCAGAGCTGCTTA
R:
GGTGCTCTTGCTCAGTCCATT
Band lengths:
308-542
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]