MmuEX6048714 @ mm9
Exon Skipping
Gene
ENSMUSG00000037012 | Hk1
Description
hexokinase 1 [Source:MGI Symbol;Acc:MGI:96103]
Coordinates
chr10:61749096-61755217:-
Coord C1 exon
chr10:61755062-61755217
Coord A exon
chr10:61752908-61753141
Coord C2 exon
chr10:61749096-61749400
Length
234 bp
Sequences
Splice sites
3' ss Seq
TACTCTCACCCACCTCCCAGGGA
3' ss Score
7.28
5' ss Seq
ACAGTGAGT
5' ss Score
8.34
Exon sequences
Seq C1 exon
GTTCGAGAAGATGGTGAGCGGCATGTACATGGGGGAGCTGGTCCGGCTGATCCTGGTGAAGATGGCCAAGGAAAGCCTCTTATTTGAAGGGCGCATTACTCCAGAGCTGCTCACGAGGGGCAAGTTCACCACTAGCGACGTAGCCGCCATTGAAAC
Seq A exon
GGATAAGGAAGGCGTTCAAAATGCCAAGGAAATCTTGACCCGCCTGGGAGTGGAGCCGTCTCACGATGACTGCGTATCGGTCCAGCACGTATGCACGATCGTCTCCTTCCGATCAGCCAACCTGGTGGCTGCCACGCTCGGTGCCATCTTGAACCGCCTGCGGGACAATAAGGGCACGCCCAGGCTGCGGACCACAGTTGGCGTAGACGGTTCTCTCTACAAGATGCACCCACA
Seq C2 exon
GTATTCCCGGCGGTTCCACAAGACCCTGAGGCGCCTGGTGCCTGACTCGGACGTCCGGTTCCTCCTCTCGGAGAGTGGCAGTGGCAAGGGAGCCGCCATGGTGACCGCTGTGGCCTACCGCCTGGCCGAGCAGCACCGGCAGATTGAGGAAACCCTGTCCCACTTCCGCCTCAGCAAGCAGGCACTGATGGAGGTGAAGAAGAAGCTGCGGTCAGAGATGGAAATGGGGCTGAGAAAGGAGACCAACAGCAGAGCTACGGTCAAAATGCTGCCTTCTTATGTTCGGAGCATCCCAGATGGGACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000037012-'27-29,'27-27,29-29=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.089 C2=0.078
Domain overlap (PFAM):
C1:
PF0372711=Hexokinase_2=FE(39.7=100)
A:
PF0372711=Hexokinase_2=FE(60.9=100)
C2:
PF0372711=Hexokinase_2=PD(31.2=38.8),PF0034916=Hexokinase_1=PU(29.1=58.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGCATTACTCCAGAGCTGCTC
R:
CCCATTTCCATCTCTGACCGC
Band lengths:
293-527
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: