BtaEX6105385 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000012380 | HK1
Description
Bos taurus hexokinase 1 (HK1), mRNA. [Source:RefSeq mRNA;Acc:NM_001012668]
Coordinates
chr28:25900569-25906739:+
Coord C1 exon
chr28:25900569-25900724
Coord A exon
chr28:25903445-25903678
Coord C2 exon
chr28:25906435-25906739
Length
234 bp
Sequences
Splice sites
3' ss Seq
TTTGGCCTCTGACTTCACAGGAA
3' ss Score
9.46
5' ss Seq
ACAGTGAGT
5' ss Score
8.34
Exon sequences
Seq C1 exon
GTTTGAGAAGATGGTCAGTGGCATGTACCTGGGCGAGCTGGTCCGACTGATCCTGGTCAAGATGGCCAAGGAGGGCCTCTTATTTGAAGGGCGGATCACCCCAGAGCTGCTCACCAGAGGGAAGTTTAACACCAGTGACGTGTCGGCCATCGAAAA
Seq A exon
GAATAAGGAAGGCCTCCACAATGCCAAAGAAATCCTGACCCGCCTGGGAGTGGAGCCGTCTGATGACGACTGTGTTGCGGTTCAGCATGTGTGCACCATCGTCTCATTTCGCTCTGCCAACCTGGTGGCGGCGACCCTGGGTGCCATCTTGAGCCGCCTTCGAGATAACAAGGGCACGCCCAGGCTGCGGACCACGGTTGGTGTCGACGGGTCCCTTTACAAGACGCACCCACA
Seq C2 exon
GTATTCTCGGCGTTTCCACAAGACTCTGCGGCGCTTGGTACCCGACTGTGATGTGCGTTTCCTCCTCTCCGAGAGCGGCAGTGGCAAGGGGGCCGCCATGGTGACTGCCGTGGCCTACCGCCTGGCTGAGCAGCACCGGCAGATAGAGGAGACCCTGGCCCACTTCAGCCTCACCAAGGAAATGCTGCTGGAGGTGAAAAAGCGGATGCGGGCTGAGATGGAATTGGGGCTGGGCAAGCAGACGCATGACAAGGCTGTGGTCAAGATGTTGCCCTCCTTCGTCCGGAGCACTCCTGATGGGACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000012380-'16-9,'16-8,18-9=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.038 C2=0.010
Domain overlap (PFAM):
C1:
PF0372711=Hexokinase_2=FE(21.7=100)
A:
PF0372711=Hexokinase_2=FE(32.5=100)
C2:
PF0372711=Hexokinase_2=PD(16.7=38.8),PF0034916=Hexokinase_1=PU(29.1=58.3)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCCTCTTATTTGAAGGGCGG
R:
AATTCCATCTCAGCCCGCATC
Band lengths:
308-542
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]