GgaEX6047296 @ galGal3
Exon Skipping
Gene
ENSGALG00000009754 | HK2
Description
NA
Coordinates
chrUn_random:10837462-10838703:+
Coord C1 exon
chrUn_random:10837462-10837617
Coord A exon
chrUn_random:10837728-10837961
Coord C2 exon
chrUn_random:10838399-10838703
Length
234 bp
Sequences
Splice sites
3' ss Seq
TTCTGTTCTTCGGTGCACAGGGA
3' ss Score
7.39
5' ss Seq
GCAGTAAGT
5' ss Score
9.07
Exon sequences
Seq C1 exon
GTTCGAGAAGATGATCAGCGGGATGTACATGGGCGAGCTGGTGCGCCTCATCCTGGTGAAGATGGCCAAGGAGGGGCTCCTCTTCCAAGGGAAGCTCTCTTCGGATCTGCGCACCACCGGACACTTCGAGACCAGATTTGTCTCCGCTATTGAGAA
Seq A exon
GGAGAAAGAGGGGCTGCAGAAAGCCCACGAGATCCTCACCAAGCTGGGCCTGGAGCCATCCCACGAGGACTGCCTGGCCACCCACCGCATCTGCCAGATCGTCTCCACCCGCTCGGCCAACCTCTGTGGGGCCACGCTGGCCGCCGTGCTGCGCCGCATCAAGGAGAACAAGGGGGTGGACCGGCTGCGCTCCACCGTCGGCGTGGATGGCTCCGTCTACAAGAAGCACCCGCA
Seq C2 exon
CTTTGCCCGACGCCTCCATAAGACAGTGAGGAAGCTGCTGCCCGACTGCGAGATCCGATTCGTGAGGTCGGAAGATGGCAGTGGCAAAGGGGCGGCCATGGTGACGGCGGTGGCCTACCGGCTGGCGGCCCAGCACAAGGCCCGGCAGAAGATCCTGGAGGCGCTGAAGCTGAGTCACGAGCAGCTCCTGGAGGTGAAGCGGAGGATGAGGGTTGAAATGGAGAAGGGGTTGGGCAAGGAGACGCACGCGGAGGCCACGGTGAAGATGCTGCCCACATACGTGTGCTCAACTCCAGATGGGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009754-'13-15,'13-14,14-15=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.029
Domain overlap (PFAM):
C1:
PF0372711=Hexokinase_2=FE(21.7=100)
A:
PF0372711=Hexokinase_2=FE(32.5=100)
C2:
PF0372711=Hexokinase_2=PD(16.7=38.8),PF0034916=Hexokinase_1=PU(29.1=58.3)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCATCCTGGTGAAGATGGCCA
R:
CTGCTCGTGACTCAGCTTCAG
Band lengths:
293-527
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]