BtaEX6042950 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000013108 | HK2
Description
hexokinase 2 [Source:HGNC Symbol;Acc:HGNC:4923]
Coordinates
chr11:9734526-9739860:-
Coord C1 exon
chr11:9739705-9739860
Coord A exon
chr11:9735924-9736157
Coord C2 exon
chr11:9734526-9734830
Length
234 bp
Sequences
Splice sites
3' ss Seq
ACACTGTTTCTGATCCCCAGGGA
3' ss Score
9.14
5' ss Seq
CCAGTGAGT
5' ss Score
8.28
Exon sequences
Seq C1 exon
ATTTGAAAAGATGATCAGTGGAATGTACATGGGGGAACTGGTGAGGCTTATCCTGGTGAAGATGGCCAAGGAGGAGCTGCTTTTTGGGGGGAAGCTCAGCCCTGAACTTCTTGCCACAGGCCATTTTGAGACCAAAGATGTTTCAGATATTGAAGG
Seq A exon
GGAGAAGGATGGCATCCAGAAGGCCCGTGAGATCCTGGTGCGGCTGGGTCTGGACCCAACACATGAGGACTGTGTGGCCACTCATCGGGTCTGCCAGATCGTGTCCACACGCTCAGCCAGCCTGTGCGCGGCCACGCTGGCAGCCGTGCTGTGGCGCATCAAGGAGAACAAAGGCGTGGACCGGCTGCGCTCCACTGTCGGGGTCGACGGCTCAGTCTACAAGAAGCACCCCCA
Seq C2 exon
CTTTGCCAAGCGTCTTCACAAGACCGTGCGGCGCCTCGTGCCTGACTGTGACGTCCGCTTCCTCCGCTCTGAGGATGGCAGTGGCAAGGGGGCAGCCATGGTGACGGCAGTGGCCTATCGGCTGGCTGATCAGCACCGAGCCCGCCAGAAGACCCTGGAGTCTCTGAAGCTGAGCCGTGAGCAGCTGCTGGAGGTCAAGAGGAGGATGAAGATAGAAATGGAGCGAGGTCTGAGCAAGGAGACTCACGCCATTGCTCCTGTCAAGATGCTGCCCACCTACGTGTGTGCCACCCCTGATGGCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000013108-'9-10,'9-9,10-10=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0372711=Hexokinase_2=FE(21.7=100)
A:
PF0372711=Hexokinase_2=FE(32.5=100)
C2:
PF0372711=Hexokinase_2=PD(16.7=38.8),PF0034916=Hexokinase_1=PU(29.1=58.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGGAGGAGCTGCTTTTTGGG
R:
ATCCTCCTCTTGACCTCCAGC
Band lengths:
296-530
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]