DreEX0040208 @ danRer10
Exon Skipping
Gene
ENSDARG00000040985 | itgbl1
Description
integrin, beta-like 1 [Source:ZFIN;Acc:ZDB-GENE-050522-410]
Coordinates
chr9:31983843-32000057:+
Coord C1 exon
chr9:31983843-31983983
Coord A exon
chr9:31984543-31984689
Coord C2 exon
chr9:31999772-32000057
Length
147 bp
Sequences
Splice sites
3' ss Seq
TGCTATGTGTCTGTTTGAAGGTC
3' ss Score
9.41
5' ss Seq
GAGGTAATT
5' ss Score
8.88
Exon sequences
Seq C1 exon
GCACATGTGTATGTGGCGAGTGCACCTGCTATGATGTGGATCCCTCAGGAGACTGGGGCGACATTCATGGAGAAACCTGCGAGTGTGATGAGAGAAGTTGCCATGCCATGTACGACAGATACTCAGATGATTTCTGTTCAG
Seq A exon
GTCACGGCCAGTGTAACTGTGGCAGGTGCGACTGCAAGGAAGGCTGGGCTGGAAGGAAATGCGATCATCCCCTCTCCTGTTCGCTGTCTGTGGAAGCCAGTCAGAAGAGGTGTCGGGGAACCTCCAGCCTGCCCTGCTTTGGCAGAG
Seq C2 exon
GGCAGTGTTTGTGTGGTCAGTGCACATGTCACCCACCTGGAGATAAACGTGTGCACGGCAAGAACTGTGAGTGTGACGACAGGCAGTGCGAGGATTTGAACGGAGAGATCTGTGGAGGTAAAACACACACACACACACGCGCACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACAGCTCCATAGACAAACAATGATGCTGCTGTTGTTTGGCCATCTCTACTCTAGATGAGAAAAATCCTTAAAAAAAAAAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000040985-'6-7,'6-5,7-7
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.319
Domain overlap (PFAM):
C1:
PF079748=EGF_2=PD(66.7=54.2),PF079748=EGF_2=PU(47.5=39.6)
A:
PF079748=EGF_2=PD(50.0=40.0),PF079748=EGF_2=PU(34.3=24.0)
C2:
PF079748=EGF_2=PD(62.9=56.4),PF079748=EGF_2=PU(29.0=23.1)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGACTGGGGCGACATTCATG
R:
TGTGTGTGTGTGTGTGTGTGT
Band lengths:
256-403
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]