MmuEX0024696 @ mm10
Exon Skipping
Gene
ENSMUSG00000032925 | Itgbl1
Description
integrin, beta-like 1 [Source:MGI Symbol;Acc:MGI:2443439]
Coordinates
chr14:123846439-123954687:+
Coord C1 exon
chr14:123846439-123846579
Coord A exon
chr14:123857433-123857579
Coord C2 exon
chr14:123954571-123954687
Length
147 bp
Sequences
Splice sites
3' ss Seq
CACTCCTCCTTTCTGTGTAGGTC
3' ss Score
10.16
5' ss Seq
GGGGTGAGT
5' ss Score
7.93
Exon sequences
Seq C1 exon
GAACATGTGTATGTGGTGAATGTTCTTGCCATGATGTTGATCCAACTGGGGACTGGGGAGACATTCATGGGGACACGTGTGAGTGTGATGAAAGGGACTGCAGAGCTGTTTATGATCGATACTCTGATGATTTCTGTTCAG
Seq A exon
GTCATGGGCAGTGTAACTGTGGAAGATGTGACTGCAGAGCAGGCTGGTATGGGAAGAAATGTGAGCACCCAAGGAATTGCCCATTGTCAGCTGAGGAGAGCACCAAGAAGTGCCAGGGTAGTTCTGATCTTCCTTGCTCTGGAAGGG
Seq C2 exon
GCAGATGCGAATGTGGCAGATGCACTTGTTACCCTCCTGGGGACAGCAGAGTCTATGGCAAGACCTGTGAGTGTGATGACCGGCGCTGCGAGGACCTGGATGGTGTGGTCTGCGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000032925-'17-41,'17-38,19-41
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF079748=EGF_2=PD(66.7=54.2),PF079748=EGF_2=PU(40.0=29.2)
A:
PF079748=EGF_2=PD(57.1=40.0),PF079748=EGF_2=PU(34.3=24.0)
C2:
PF079748=EGF_2=PD(62.9=55.0),PF079748=EGF_2=PU(32.3=25.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTGGTGAATGTTCTTGCCATGA
R:
CGCAGACCACACCATCCAG
Band lengths:
244-391
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types