RnoEX0045277 @ rn6
Exon Skipping
Gene
ENSRNOG00000004516 | Itgbl1
Description
integrin subunit beta like 1 [Source:RGD Symbol;Acc:1560635]
Coordinates
chr15:110248169-110359315:+
Coord C1 exon
chr15:110248169-110248309
Coord A exon
chr15:110265591-110265737
Coord C2 exon
chr15:110359199-110359315
Length
147 bp
Sequences
Splice sites
3' ss Seq
CCCTCCTCCTTACTCTGTAGGTC
3' ss Score
11.66
5' ss Seq
GGGGTGAGT
5' ss Score
7.93
Exon sequences
Seq C1 exon
GAACATGTGTATGTGGTGAATGTTCTTGCCATGATGTTGATCCAACTGGCGACTGGGGAGACATTCATGGAGACACATGCGAGTGTGATGAAAGGGACTGCAGAGCTGTTTATGATCGATACTCTGATGATTTCTGTTCAG
Seq A exon
GTCACGGGCAGTGTAACTGTGGAAGATGTGACTGCAGAGCAGGCTGGTATGGGAAGAAGTGTGAGCACCCAAAGAACTGCCCATTGTCAGCTGAGGAGAGCACCAGAAAGTGCCAGGGTAGCTCTGATCTGCCTTGTTCTGGAAGGG
Seq C2 exon
GCAGATGCGAATGTGGCAGATGTACCTGTTACCCTCCCGGGGACAGCAGAGTATATGGCAAGACCTGTGAGTGTGATGACCGGCGCTGTGAAGACCTAGACGGTGTGGTCTGTGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000004516_MULTIEX1-1/3=C1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF079748=EGF_2=PD(66.7=54.2),PF079748=EGF_2=PU(40.0=29.2)
A:
PF079748=EGF_2=PD(57.1=40.0),PF079748=EGF_2=PU(34.3=24.0)
C2:
PF079748=EGF_2=PD(62.9=55.0),PF079748=EGF_2=PU(32.3=25.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTGGTGAATGTTCTTGCCATGA
R:
TCCACAGACCACACCGTCTAG
Band lengths:
246-393
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]