GgaEX6005528 @ galGal4
Exon Skipping
Gene
ENSGALG00000016867 | ITGBL1
Description
integrin, beta-like 1 (with EGF-like repeat domains) [Source:HGNC Symbol;Acc:HGNC:6164]
Coordinates
chr1:142634568-142680875:-
Coord C1 exon
chr1:142680735-142680875
Coord A exon
chr1:142678402-142678548
Coord C2 exon
chr1:142634568-142634684
Length
147 bp
Sequences
Splice sites
3' ss Seq
TAGCTGTATTCATTGCAAAGGTC
3' ss Score
3.23
5' ss Seq
GAGGTAAGC
5' ss Score
9.85
Exon sequences
Seq C1 exon
GCACATGTGTATGCGGGGAATGTACCTGCCATGATGTGGACCCAACTGGTGACTGGGGAGATATTCATGGAGATACTTGTGAGTGTGATGAAAGAAACTGCAAAGCAGTGTATGATAGATATTCTGATGACTTTTGTTCAG
Seq A exon
GTCACGGACAGTGTAATTGCGGAAAGTGTGACTGTAAAGAAGGATGGACAGGGAAGAAGTGTGAACATCCACGGTCTTGTCCATTGTCAGCTGAGGAAAGCGTGAAGAAATGCAAAGGAAATTCTAATTTACCTTGCTCTGGAAGAG
Seq C2 exon
GAAAATGTGAATGTGGCCAATGCACTTGTTTCCCTCCAGGAGACAACAGAGTCTATGGAAAAAACTGTGAATGTGATGATCGACAGTGTGAAAGTGCGGATGGCAATGTCTGTGGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000016867-'8-10,'8-7,9-10=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF079748=EGF_2=PD(66.7=54.2),PF079748=EGF_2=PU(40.0=29.2)
A:
PF079748=EGF_2=PD(57.1=40.0),PF079748=EGF_2=PU(30.0=24.0)
C2:
PF079748=EGF_2=PD(67.5=67.5),PF079748=EGF_2=PU(32.3=25.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCACATGTGTATGCGGGGAAT
R:
CCATCCGCACTTTCACACTGT
Band lengths:
244-391
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]