DreEX0040313 @ danRer10
Exon Skipping
Gene
ENSDARG00000014655 | itpr1a
Description
inositol 1,4,5-trisphosphate receptor, type 1a [Source:ZFIN;Acc:ZDB-GENE-070604-3]
Coordinates
chr6:39944809-39946959:+
Coord C1 exon
chr6:39944809-39944967
Coord A exon
chr6:39945102-39945200
Coord C2 exon
chr6:39946876-39946959
Length
99 bp
Sequences
Splice sites
3' ss Seq
TTGTGTTTGTGTGTCTTCAGGTG
3' ss Score
11.43
5' ss Seq
GAAGTAAAA
5' ss Score
0.12
Exon sequences
Seq C1 exon
CTTCTCCATCTGAAGAGTAATAAATATCTGACGGTGAACAAGCGTTTGCCGGCTCTTCTTGAGAAGAATGCCATGCGTGTGACGCTGGACGCTGCAGGGAATGAAGGCTCGTGGTTTTACATCCAGCCCTTCTATAAGCTGCGCTCTATAGGGGATAAT
Seq A exon
GTGGTCATTGGAGATAAGGTCGTGTTAAACCCTGTCAATGCCGGACAGCCGCTGCACGCCAGCAGCCATCAGCTTGTGGATAATCCAGGCTGCAATGAA
Seq C2 exon
GTGAATTCAGTGAACTGCACCACCAGTTGGAAAATCGTTCTCTTCATGAAATGGAGCGACAACCAGGAGATTGTCTTGAAAGGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000014655-'5-6,'5-5,6-6
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.061 C2=0.000
Domain overlap (PFAM):
C1:
PF087096=Ins145_P3_rec=FE(23.0=100)
A:
PF087096=Ins145_P3_rec=FE(14.2=100)
C2:
PF087096=Ins145_P3_rec=PD(8.8=71.4),PF0281514=MIR=PU(1.5=10.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GTTTGCCGGCTCTTCTTGAGA
R:
CCTGGTTGTCGCTCCATTTCA
Band lengths:
183-282
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]