DreEX0043656 @ danRer10
Exon Skipping
Gene
ENSDARG00000023479 | lrp13
Description
low-density lipoprotein receptor related-protein 13 [Source:ZFIN;Acc:ZDB-GENE-130729-1]
Coordinates
chr5:8697580-8701266:-
Coord C1 exon
chr5:8701137-8701266
Coord A exon
chr5:8699078-8699265
Coord C2 exon
chr5:8697580-8697763
Length
188 bp
Sequences
Splice sites
3' ss Seq
TCTGGTCTGTGTTTGATCAGGTG
3' ss Score
8.67
5' ss Seq
GCGGTACAG
5' ss Score
3.82
Exon sequences
Seq C1 exon
AACTGTAAGGAGTCTCCAGTGCAGTGCGGCGAGTACCAGTTTTCCTGCTCCTCCAAAACTCAGTGTATCCCTCAATCCTGGCGCTGTGATGGGTCTGAAGACTGCAGGGATGGCAGTGACGAATCTGCTT
Seq A exon
GTGCAAGTGTGTCCTGTCCTCCCCACCTCTTCCAGTGTGGGAGTTCGGAGTGTGTGGAGTTTTCTCAACTCTGTAATGGAGTCACCAACTGTCTGGACGGGTCAGATGAGGGCGGCTCCTGTCAGACTGAGAAATGCTCTGAACAGTTAAAGTGTGCCCAAGACTGCCACAGCACACCTGCAGGAGCG
Seq C2 exon
CGCTGCGGGTGCAGGATGGGCTATAAACCTGTGGATGATGGCCTGAGGTGTGCAGATGTGGATGAGTGTGTGGAGCGTCCAAACATCTGTTCACACCGCTGTAACAACACTCTAGGCTCTTTCCAGTGCTCCTGTAGTCATGGTTATGTTCTGGAACCTGATGGCCACAGCTGCAAAATCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000023479-'9-10,'9-9,11-10
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0005713=Ldl_recept_a=PD(2.7=2.3),PF0005713=Ldl_recept_a=WD(100=86.4)
A:
PF0005713=Ldl_recept_a=PD(0.1=0.0),PF0005713=Ldl_recept_a=WD(100=68.3)
C2:
PF0764510=EGF_CA=WD(100=64.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGTATCCCTCAATCCTGGCG
R:
CTGTGATTTTGCAGCTGTGGC
Band lengths:
252-440
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]