RnoEX0001986 @ rn6
Exon Skipping
Gene
ENSRNOG00000054809 | AABR07026032.1
Description
NA
Coordinates
chr16:60010558-60012008:-
Coord C1 exon
chr16:60011879-60012008
Coord A exon
chr16:60011528-60011715
Coord C2 exon
chr16:60010558-60010744
Length
188 bp
Sequences
Splice sites
3' ss Seq
AGCCATCCCCTCTCCAACAGGTG
3' ss Score
9.01
5' ss Seq
TCGGTGAGT
5' ss Score
11.11
Exon sequences
Seq C1 exon
GATTGTGGCCTCAAGGTGATCTCATGTGGCCCAAGGCAGTGGGCTTGTGGCAGTGGAGACCAGTGTGTGCCTGACTTCTGGCACTGTGACGGACAGAGTGACTGCAGAGATGGCAGTGATGAGGCTGGAT
Seq A exon
GTGCTCCACAGAGGTGCCAGGATTCCGAGTTCCAGTGTGCTACTACTGGTGCCTGCCTCAGCTTCAGCATGGTGTGTGACGGGCGAGAGGACTGTGCAGATGGTTCAGATGAGGGTGGGGAGTGTTCCTCATCAATGTGCAGCCCCGAACTATGTTACCACTCTTGCTACCAGTCCCCAACTGGGTCG
Seq C2 exon
GTATGTGCTTGTGCCCCAGGCTTTGAGCTGGAGAGCAATGGGCAAATCTGTCGGGATGTAAATGAGTGCCAGCAGCCATCTGGTCAACCTTGCAGTCAGACCTGTATCAATACTGAGGGCTCATACATCTGTGCCTGTCACCCTGGCTACTTGCTGGGCTCTGATGGCCACACTTGTAAGGCAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000054809-'4-6,'4-5,5-6
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGATCTCATGTGGCCCAAGG
R:
AGGCACAGATGTATGAGCCCT
Band lengths:
251-439
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]