GgaEX1033975 @ galGal4
Exon Skipping
Gene
ENSGALG00000023172 | LRP5L
Description
low density lipoprotein receptor-related protein 5-like [Source:HGNC Symbol;Acc:HGNC:25323]
Coordinates
chr4:48990904-48991788:+
Coord C1 exon
chr4:48990904-48991033
Coord A exon
chr4:48991328-48991506
Coord C2 exon
chr4:48991602-48991788
Length
179 bp
Sequences
Splice sites
3' ss Seq
GGACAGCTTCTCCCCTGCAGGCC
3' ss Score
6.65
5' ss Seq
CCTGTGAGT
5' ss Score
7.21
Exon sequences
Seq C1 exon
GGCTGTCCCCTGGAGGACCAGCAGTGCGGTGAACGGCAGTGGGGCTGTTCGCATGGCCATGAGTGCATCCCTGACGCCTGGCGGTGTGACAGAGAGAGCGACTGCAGTGATGGCAGCGACGAGGCTGGCT
Seq A exon
GCCATCCCACTCCCTGCCTGAGCCACGAGTACCCCTGTGGGCTGGGGATCTGCCTGAATGCATCGTTGGTGTGCAGCGGCCAACAGGACTGTGCGGATGGCTCAGATGAGGGGGGGAACTGCTCCCTGCCCTGCCAGAGACCCTGCTCACAGCTCTGCTACCCATCGCCCCAGGGACCT
Seq C2 exon
CGTTGCTGGTGCACCCCAGGCTATCAGCTGGCTGAAGATGGCATGTCCTGTGTGGATGTGGATGAGTGCACAGAGCAGGGCAAGAGAACCTGCAGCCAGATCTGCCTCAATGCTCCAGGAACCTACAGCTGTGGCTGCCTCTCTGGCTACCTGCTGGAGCCTGATGGCCACATCTGCAAACTCAGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000023172_MULTIEX1-2/2=1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0005713=Ldl_recept_a=PD(2.7=1.8),PF0005713=Ldl_recept_a=WD(100=69.1)
A:
PF0005713=Ldl_recept_a=WD(100=63.3),PF146701=FXa_inhibition=PU(52.6=33.3)
C2:
PF146701=FXa_inhibition=PD(42.1=25.4),PF0764510=EGF_CA=WD(100=65.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATGAGTGCATCCCTGACGC
R:
CTGAGTTTGCAGATGTGGCCA
Band lengths:
258-437
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]