MmuEX1012185 @ mm10
Exon Skipping
Gene
ENSMUSG00000109372 | Gm19410
Description
predicted gene, 19410 [Source:MGI Symbol;Acc:MGI:5011595]
Coordinates
chr8:35802208-35803617:+
Coord C1 exon
chr8:35802208-35802337
Coord A exon
chr8:35802528-35802712
Coord C2 exon
chr8:35803431-35803617
Length
185 bp
Sequences
Splice sites
3' ss Seq
AACCATCCCCTCCCCCACAGGTG
3' ss Score
11.02
5' ss Seq
CCGGTGAGT
5' ss Score
10.9
Exon sequences
Seq C1 exon
GACTGTGGCCTCAAGGTGATCTCATGTGGCCCAAGGCAGTGGGCTTGTGACAGTGGAGACCAGTGTGTGCCTGACTTCTGGCACTGTGATGGACAGAGCGACTGCAGAGATGGCAGTGACGAAGCTGGAT
Seq A exon
GTGCTCCGCAGAAGTGCCAGGATTCCGAGTTCCAGTGTGCTACTGGTGCCTGCCTCAGCTTCAGTATGGTGTGTGATGGGCGAGAGGACTGTGTGGATGGTTCAGATGAGGGTGGGGAGTGTTCCTCATCAGTGTGCAGCCCTGGGCTATGTTACCACTCCTGCTACCAGTCCCCAACTGGGCCG
Seq C2 exon
GTATGTGTTTGTGCCCCAGGCTTTGAGTTGGAGAGCAATGGCCAAATCTGTCAAGATGTAAATGAGTGCCAGCAGCCATCTGGTCAACCTTGCAGTCAGACCTGTATCAATACTGAGGGCTCATACATCTGTGCCTGTCACCCTGGCTACTTGCTGGGCCCTGATGGCCACACTTGTAAGGCAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000109372-'21-24,'21-23,22-24
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0005713=Ldl_recept_a=PD(2.6=2.3),PF0005713=Ldl_recept_a=WD(100=84.1)
A:
PF0005713=Ldl_recept_a=PD(0.1=0.0),PF0005713=Ldl_recept_a=WD(100=61.3)
C2:
PF0764510=EGF_CA=WD(100=65.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGATCTCATGTGGCCCAAGG
R:
AGGCACAGATGTATGAGCCCT
Band lengths:
251-436
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types