DreEX0043714 @ danRer10
Exon Skipping
Gene
ENSDARG00000061517 | lrp1bb
Description
low density lipoprotein receptor-related protein 1Bb [Source:ZFIN;Acc:ZDB-GENE-070912-401]
Coordinates
chr9:36800297-36801746:+
Coord C1 exon
chr9:36800297-36800478
Coord A exon
chr9:36800669-36800868
Coord C2 exon
chr9:36801558-36801746
Length
200 bp
Sequences
Splice sites
3' ss Seq
GGTCACTCTCTGTCCCGCAGGTA
3' ss Score
10.01
5' ss Seq
GGGGTACAA
5' ss Score
-0.67
Exon sequences
Seq C1 exon
ATTGTTCACCGAACAGCTGTTCCAAGTGCACTGGCCGTGGACTGGATCGGGAAGAACTTGTACTGGTGTGATGTAGAAAGAAAAACACTGGAAGTCTCCAAATCCAACGGCTTATACCCTACCATTTTAGTGAGCTCGGGCCTGAAAAACCCAACGGACCTGGCACTGGATGCTCAAACTGG
Seq A exon
GTACGTGTTCTGGATTGACTGCTGTGAAAATCCTCATGTGGGTCGCATTGGCATGGACGGCCAAGGCCAAAGTGTGATTGTGAACAAAGAGATCTACAGCCCTTCAGCTTTAACCATTGACTACACAAACAAGAGGATCTACTGGGCTGATGATAATCACATCCTTTTTGCCAACATGGACGGTTCTCAGAGGCACCGGG
Seq C2 exon
TTCCTCATGACCACATCCAGGGTGTGATGGGGCTCACGCTGTTCGAGGACTTCATTTATTGGACTGACGGGAAGTCTAAATCTCTCCGCCGAGCTCATAAGACCACTGGTGCTAATGCTGTGGAACTCCTAAATTCATGGCAAGCCATTAAGTCTGTCATTGTCTACCACCCACTGCGCCAACCTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000061517-'59-61,'59-60,60-61
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.032
Domain overlap (PFAM):
C1:
PF0005812=Ldl_recept_b=PD(35.7=24.2),PF0005812=Ldl_recept_b=WD(100=66.1),PF0005812=Ldl_recept_b=PU(0.1=0.0)
A:
PF0005812=Ldl_recept_b=WD(100=62.7)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACAGCTGTTCCAAGTGCACT
R:
CACAGCATTAGCACCAGTGGT
Band lengths:
293-493
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]