GgaEX1033883 @ galGal3
Exon Skipping
Gene
ENSGALG00000012407 | LRP1B
Description
NA
Coordinates
chr7:33540451-33549437:-
Coord C1 exon
chr7:33549256-33549437
Coord A exon
chr7:33548623-33548822
Coord C2 exon
chr7:33540451-33540639
Length
200 bp
Sequences
Splice sites
3' ss Seq
ATTTTGTTGGTTTTTTTTAGGTA
3' ss Score
10.52
5' ss Seq
AAGGTTGGT
5' ss Score
8.46
Exon sequences
Seq C1 exon
GTAGTCCACAACACAGCTGTTCCCAATGCACTGGCTGTTGATTGGATTGGAAAGAATTTATATTGGTCTGATACTGAAAAGAGAATTATTGAAGTGTCTAAAGTGAATGGCTTATACCCTACTGTCCTTGTGAGCAAAAGAGTGAAGTTTCCTAGAGATCTCTCCTTAGATCCACAAGCTGG
Seq A exon
GTACTTGTACTGGATTGATTGCTGTGAGTATCCTCACATTGGCCGTGTTGGTATGGATGGCTCCAGTCAAACTGTTGTCATAGAAACACAGATATCTAGACCTATGGCACTTACAATAGATTATGTCAACCACAGACTGTATTGGGCTGATGAAAATCATATTGAGTTTTCTGACATGGATGGATCTCATAGACATAAAG
Seq C2 exon
TCCCTAATCAAGATATTCCAGGGGTGATTGCACTAACGTTGTTTGAAGACTACATCTACTGGACAGATGGGAAAACCAAATCACTCAACCGTGCCCACAAAACCTCTGGATTAGACAGACTGTCACTGATTAACTCCTGGCATACCATAACTGATATACAGGTGTATCATTCTTACAGGCAACCTGATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012407-'83-93,'83-91,84-93=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.024 C2=0.000
Domain overlap (PFAM):
C1:
PF0005812=Ldl_recept_b=PD(33.3=23.0),PF0005812=Ldl_recept_b=PU(0.1=0.0)
A:
PF0005812=Ldl_recept_b=WD(100=61.8)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTCCACAACACAGCTGTTCC
R:
AATCCAGAGGTTTTGTGGGCA
Band lengths:
292-492
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]