BtaEX6009985 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000024632 | LRP1B
Description
low density lipoprotein receptor-related protein 1B [Source:HGNC Symbol;Acc:HGNC:6693]
Coordinates
chr2:56731759-56757802:+
Coord C1 exon
chr2:56731759-56731940
Coord A exon
chr2:56740329-56740528
Coord C2 exon
chr2:56757614-56757802
Length
200 bp
Sequences
Splice sites
3' ss Seq
CTGCTGATTTTCTTTTCTAGGTA
3' ss Score
12.45
5' ss Seq
AAGGTTAGT
5' ss Score
8.54
Exon sequences
Seq C1 exon
GTAGTGCATAACACAGCCGTCCCCAATGCACTTGCTGTCGATTGGATTGGAAAAAACCTCTATTGGTCTGACACAGAAAAAAGGATCATTGAAGTATCCAAACTTAATGGCTTATACCCTACTATACTTGTTAGCAAAAGGCTGAAGTTTCCCAGGGACCTGTCTTTAGATCCTCGTGCTGG
Seq A exon
GTATTTGTATTGGATTGACTGCTGTGAGTACCCTCACATTGGCCGTGTTGGAATGGATGGAACCAATCAGAGTGTTGTCATAGAAACCAAGATTTCTAGACCTATGGCACTAACAATAGATTATGTCAACCATAGACTCTATTGGGCTGATGAAAATCATATCGAGTTTAGCAACATGGATGGATCTCACAGACACAAAG
Seq C2 exon
TCCCTAATCAAGATATTCCAGGGGTGATTGCACTAACATTGTTTGAAGACTACATCTACTGGACTGATGGGAAAACCAAGTCACTCAGCCGTGCCCATAAAACCTCGGGAGCAGACAGACTCTCACTGATTAACTCATGGCATGCCATCACAGATATCCAGGTGTATCATTCTTATAGACAACCTGATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000024632-'8-9,'8-8,9-9=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.029 C2=0.000
Domain overlap (PFAM):
C1:
PF0005812=Ldl_recept_b=PD(33.3=23.0),PF0005812=Ldl_recept_b=WD(100=67.2),PF0005812=Ldl_recept_b=PU(0.1=0.0)
A:
PF0005812=Ldl_recept_b=WD(100=61.8)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATAACACAGCCGTCCCCAATG
R:
AGTGAGAGTCTGTCTGCTCCC
Band lengths:
302-502
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]