DreEX6098192 @ danRer10
Exon Skipping
Gene
ENSDARG00000094171 | lrp1ba
Description
low density lipoprotein receptor-related protein 1Ba [Source:ZFIN;Acc:ZDB-GENE-050208-608]
Coordinates
chr22:14434711-14436989:-
Coord C1 exon
chr22:14436808-14436989
Coord A exon
chr22:14435021-14435220
Coord C2 exon
chr22:14434711-14434947
Length
200 bp
Sequences
Splice sites
3' ss Seq
AAATCCCATTGGTGCCTTAGGTA
3' ss Score
4.61
5' ss Seq
AAGGTAAGT
5' ss Score
11
Exon sequences
Seq C1 exon
GTGGTTCACAGGACATCTGTCCCCAGTGCTCTCGCGGTCGACTGGATCGGCAAGAACTTGTATTGGTGTGACGGCGAGAGAAAGACCCTCGAGGTGGCGAAAGCTAATGGACTCTACCCCACTGTACTGCTGAGGACTGGATTGAGAAATCCAACTGCTCTGGCTCTCGACACTCTGACAGG
Seq A exon
GTATGTGTTCTGGATCGACTGTTGTGAACAGCCCCAAATTGGACGGATCGGGATGGACGGCAGCAAGCCACGCGTCATAATTGATACAGAAATACGCTCTCCTTCAGCTTTGACCATTGACCACGTCAACAAAAGGATTTACTGGGCTGACGAGAACCATATCTTATTTGCAAATATAGACGGTACCAAAAGACACAAAG
Seq C2 exon
TCCCTATACAAGACATAGGTGGAGTAACGGGTCTCACATTGTTTGAGGACTTCATTTACTGGAGTGACCAGAAGTCCAAAACCCTCAGTCGCTCTCACAAGACGTCGGGCGGTAAACAAACCGAGCTCCTCAGCTCATGGCAAACCATTCGAGACATTCAAGTCTACCATCCGCTCCGACAGCCTGACGGTATTACAGCGGGAAGCTTCTTGGATAAGTCTACAGTTGACTGTTTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000094171-'3-4,'3-3,4-4=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.037
Domain overlap (PFAM):
C1:
PF0005812=Ldl_recept_b=WD(100=67.2),PF0005812=Ldl_recept_b=PU(0.1=0.0)
A:
PF0005812=Ldl_recept_b=WD(100=61.8)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACATCTGTCCCCAGTGCTCTC
R:
GCTGAGGAGCTCGGTTTGTTT
Band lengths:
304-504
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]