DreEX0044468 @ danRer10
Exon Skipping
Gene
ENSDARG00000076592 | man1b1b
Description
mannosidase, alpha, class 1B, member 1b [Source:ZFIN;Acc:ZDB-GENE-070705-482]
Coordinates
chr5:28590761-28592538:-
Coord C1 exon
chr5:28592453-28592538
Coord A exon
chr5:28592161-28592309
Coord C2 exon
chr5:28590761-28590852
Length
149 bp
Sequences
Splice sites
3' ss Seq
TGTTTTCCCTCCAAAAACAGAGA
3' ss Score
6.23
5' ss Seq
TAGGTTTGT
5' ss Score
4.07
Exon sequences
Seq C1 exon
GAATGAATGGGGATGATGTAAAAAACTCATTTGTTGTTGACCTGAAAAATGAGTACAGGTCCATTCTTCCCGAGCCGCCCTCTGAG
Seq A exon
AGAAAAGATTTCGATAGACGTGGAGCTTTTGGTTTGGAGAAACTTTTGCAAGGCAAAGTGAATGTTTCGGGTGTGTTGGGAGACCAAAATCATGGACTGGACCTCAAAAATGCAGATAAAGGATCTGAGGGACAAAAGCCTATAATTAG
Seq C2 exon
TTGGCGTGGAGCTGTGATCGAAGAAGAACAAGCCTCTGATACTGACACCAAAGACACAGAAAACCAAGGAGACCCAGCTTCATTAGCACTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000076592-'4-5,'4-4,5-5
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.138 A=0.200 C2=0.562
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACTCATTTGTTGTTGACCTGAA
R:
ATGAAGCTGGGTCTCCTTGGT
Band lengths:
146-295
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]