MmuEX0027619 @ mm10
Exon Skipping
Gene
ENSMUSG00000036646 | Man1b1
Description
mannosidase, alpha, class 1B, member 1 [Source:MGI Symbol;Acc:MGI:2684954]
Coordinates
chr2:25334377-25341716:+
Coord C1 exon
chr2:25334377-25334492
Coord A exon
chr2:25338113-25338267
Coord C2 exon
chr2:25341607-25341716
Length
155 bp
Sequences
Splice sites
3' ss Seq
TGACTCTGATTTTGGTTTAGAAG
3' ss Score
6.19
5' ss Seq
CAGGTACTG
5' ss Score
9.04
Exon sequences
Seq C1 exon
CTCTGAGTGGCAGACCTGCAGAAGTAGAGAAGATGAAGCAAGAAGTCCTGCCTGTCTTACCAGCGCCTCAGAAGGAAAGTGCTGAACAAGAAGGGTTTGCAGACATACTCTCTCAG
Seq A exon
AAGCGGCAAAGGCATTTTCGGCGGGGCCCTCCCCATCTGCAGATTAGACCCCCCAACACAGTCTCCAAGGATGGGATGCAGGATGATGCTAAGGAGAGAGAAGCAGCCCTGGGGAAGGCTCAGCAGGAAGAAAACACACAGAGAACCGTCATCAG
Seq C2 exon
CTGGCGGGGAGCCGTGATTGAGCCTGAACAGGCCACTGAACTTCCTTACAAAAGAGCTGAAGCCTCCATCAAACCTCTGGTTTTGGCATCCAAGATATGGAAAGAGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000036646_MULTIEX1-2/2=1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.684 A=0.814 C2=0.272
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGACCTGCAGAAGTAGAGAAGA
R:
ATCTTGGATGCCAAAACCAGAGG
Band lengths:
202-357
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types