DreEX6083612 @ danRer10
Exon Skipping
Gene
ENSDARG00000073792 | man1b1a
Description
mannosidase, alpha, class 1B, member 1a [Source:ZFIN;Acc:ZDB-GENE-091116-34]
Coordinates
chr21:14138734-14143357:-
Coord C1 exon
chr21:14143176-14143357
Coord A exon
chr21:14140468-14140604
Coord C2 exon
chr21:14138734-14138843
Length
137 bp
Sequences
Splice sites
3' ss Seq
TTGTGTGTTATAAATCTCAGAGA
3' ss Score
6.06
5' ss Seq
TAGGTTTGT
5' ss Score
4.07
Exon sequences
Seq C1 exon
GTATCTCTGATCGGTCATTGAAGGAGGATTGGGATGAAGTGGATAATCGGGGTCTCAGGCCCATTCCTCCTGGCCTCATCCCAAAGCTGTCTGCAGGAGTTGGTGTTCAAGACGTCCAACCAGATGTTATGCCAGAGCTTCAGAAACCCAGCATTCCATTACTTCCTAAACCTCCAGCTATG
Seq A exon
AGAAAACCTCCTAGCAAGCGTGGTCCCCCAGCGCTACAGAAGCGAATGAACGTGTCCGACTGGCAGCTGAAAGATGGAGAAGAAGGCTTGATCAAGACAGATGAAGACGGAGCAAAAGAAGCAAAAACAGTCATTAG
Seq C2 exon
CTGGCGCGGGGCGATGATTGAGGCAGAGCAGGGCACTGAGCTTCAGTCCACCATTCAGGGAAAGGATGCAACTGTGGTTGATGCTGAGGAAGCTGCTGACTTAAAAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000073792-'5-5,'5-3,6-5=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.352 A=0.674 C2=0.553
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGGTCATTGAAGGAGGATTGGG
R:
ACCACAGTTGCATCCTTTCCC
Band lengths:
249-386
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]