GgaEX6014641 @ galGal3
Exon Skipping
Gene
ENSGALG00000009079 | MAN1B1
Description
NA
Coordinates
chr17:726512-729155:-
Coord C1 exon
chr17:729019-729155
Coord A exon
chr17:728108-728268
Coord C2 exon
chr17:726512-726621
Length
161 bp
Sequences
Splice sites
3' ss Seq
ACTTTTTTTCTTTTTCTCAGAAG
3' ss Score
9.39
5' ss Seq
CAGGTAGAA
5' ss Score
6.68
Exon sequences
Seq C1 exon
GTTTAACAAGCAAATCATCGGACGAGCATGGAACAGAACCAGATGCACCTGGATTGAGGCTGGCAAATCCAGCTGTCCTACCAGCGCCCCAGAAGGCAGATGCCAACGCTGGAGACTACCCAGAGCTTTCACCTCAG
Seq A exon
AAGAAGCCAAAATTACCACATGGTCGGCGTAATCCTTCCAATTTTCAGATCAAGCCCCCTTGGGGAGATGTGAGGCTGCAAACCCGACATGACACCAGGAAGGCAGTAGAAGAGCCAGCCCAGGCTGATAAACAAGAGAAAACAGAGAAATCTGTTATCAG
Seq C2 exon
CTGGAGAGGAGCAGTGATAGAACCTGACCAAAGCAGTGAACCTCCATCTAGTAGAGTAAAGGAACCAGAAAAACCTTCATCTGTGGAAGGTGAAAGCCAGAAAGAACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009079-'4-6,'4-3,5-6=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAAGCAAATCATCGGACGAGC
R:
CTGGTTCTTTCTGGCTTTCACCT
Band lengths:
242-403
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]