RnoEX0052022 @ rn6
Exon Skipping
Gene
ENSRNOG00000012559 | Man1b1
Description
mannosidase, alpha, class 1B, member 1 [Source:RGD Symbol;Acc:1563595]
Coordinates
chr3:2549577-2555060:+
Coord C1 exon
chr3:2549577-2549692
Coord A exon
chr3:2553004-2553158
Coord C2 exon
chr3:2554951-2555060
Length
155 bp
Sequences
Splice sites
3' ss Seq
TGACTCTGACTTTGGTTTAGAAG
3' ss Score
5.26
5' ss Seq
CAGGTACCG
5' ss Score
10.05
Exon sequences
Seq C1 exon
CTCTGAGTGGCAGCCGTGCAGAAGTAGAGAAGATGAAGCTAGAAGTCCTGCCTGTCTTACCAGCTCCTCAGAAGGAAAGTGCTGAACCAGAAGGGTTTGCAGACATACTCTCTCAG
Seq A exon
AAGCGGCAAAGGCATTTGCGGCGGGGCCCTCCGCACCTGCAGATCAGACCCCCCAACACCGTCTCCAAAGATGGGATGCAGGATGATGCTAAGGAGAGGGAAGCAGCCCTGGGGAAGGCTCAGCAGGAAGAAAACACCCAGAGAACCGTCATCAG
Seq C2 exon
CTGGCGGGGAGCAGTAATTGAGCCTGAACAGGCCACTGAACCTCCTTCCAAAAGAGCTGAAGCCTCCATCAAGCCTCTGTTTTTGGCGTCCAGGATATGGAAAGAGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000012559-'4-8,'4-6,8-8
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.222 A=0.788 C2=0.500
Domain overlap (PFAM):
C1:
PF150091=TMEM173=PD(27.8=64.1)
A:
NO
C2:
NO
Main Skipping Isoform:
ENSRNOT00000016846fB8286
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCTGAGTGGCAGCCGTG
R:
TCCTGGACGCCAAAAACAGAG
Band lengths:
211-366
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]