DreEX0046778 @ danRer10
Exon Skipping
Gene
ENSDARG00000045401 | mllt10
Description
myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 10 [Source:ZFIN;Acc:ZDB-GENE-041114-176]
Coordinates
chr24:17001558-17013385:+
Coord C1 exon
chr24:17001558-17001720
Coord A exon
chr24:17003747-17003826
Coord C2 exon
chr24:17013331-17013385
Length
80 bp
Sequences
Splice sites
3' ss Seq
CTTCATTTCTGTTGTTTCAGCCT
3' ss Score
6.77
5' ss Seq
GTGGTGAGT
5' ss Score
8.95
Exon sequences
Seq C1 exon
ATGGTCTCCAGCGAGCTGTATCTGGCAGAAGAAGACGACGATTCGCCAAGTAATATGAAGGAGATGATCGGAGGCTGCTGCGTCTGCTCGGATGAGAGAGGCTGGGCCGAAAATCCCCTAGTCTACTGCGACGGCCACGGCTGTAACGTTGCCGTCCACCAAG
Seq A exon
CCTGCTATGGAATTGTCCAGGTCCCCACAGGCCCTTGGTTCTGCAGGAAATGTGAATCACAGGAACGTGCTGCCAGGGTG
Seq C2 exon
AGGTGCGAGCTGTGTCCCCAGAAAGACGGAGCACTGAAACGGACAGATAATGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000045401-'5-10,'5-7,7-10
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.061 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF138311=PHD_2=PU(48.6=32.7)
A:
PF138311=PHD_2=PD(48.6=66.7),PF138321=zf-HC5HC2H_2=PU(0.1=0.0)
C2:
PF138321=zf-HC5HC2H_2=FE(15.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCGAGCTGTATCTGGCAGAAG
R:
GTCTTTCTGGGGACACAGCTC
Band lengths:
180-260
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]