GgaEX0011294 @ galGal4
Exon Skipping
Gene
ENSGALG00000007928 | MLLT10
Description
myeloid/lymphoid or mixed-lineage leukemia; translocated to, 10 [Source:HGNC Symbol;Acc:HGNC:16063]
Coordinates
chr2:17897019-17915028:-
Coord C1 exon
chr2:17914860-17915028
Coord A exon
chr2:17911230-17911309
Coord C2 exon
chr2:17897019-17897073
Length
80 bp
Sequences
Splice sites
3' ss Seq
TTGTATCTTGTTCAAAACAGCTT
3' ss Score
6.57
5' ss Seq
GTGGTACGT
5' ss Score
8.61
Exon sequences
Seq C1 exon
ATGGTCTCTAGCGAGCCGCTGCTGCTGCCGGTGTCACTGGAGGGCGAGTTCTCCACTAGCATGAAGGAGATGATCGGCGGCTGCTGCGTGTGCTCCGACGAGAGGGGCTGGGCCGAGAACCCGCTCGTCTACTGCGACGGGCACGGCTGCAATGTCGCAGTGCATCAAG
Seq A exon
CTTGCTATGGAATTGTTCAAGTACCCACTGGACCCTGGTTCTGCAGAAAGTGTGAATCTCAGGAAAGAGCGGCCAGAGTG
Seq C2 exon
AGATGTGAATTATGCCCTCATAAGGATGGTGCTTTAAAGAGAACAGATAATGGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000007928_MULTIEX2-2/14=C1-3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF138311=PHD_2=PU(48.6=31.6)
A:
PF138311=PHD_2=PD(48.6=66.7),PF138321=zf-HC5HC2H_2=PU(0.1=0.0)
C2:
PF138321=zf-HC5HC2H_2=FE(15.3=100)
Main Skipping Isoform:
ENSGALT00000012873fB9454
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAGGGCGAGTTCTCCACTAG
R:
TCTGTTCTCTTTAAAGCACCATCCT
Band lengths:
178-258
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]