DreEX0046779 @ danRer10
Exon Skipping
Gene
ENSDARG00000045401 | mllt10
Description
myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 10 [Source:ZFIN;Acc:ZDB-GENE-041114-176]
Coordinates
chr24:17032679-17045546:+
Coord C1 exon
chr24:17032679-17032991
Coord A exon
chr24:17036566-17037225
Coord C2 exon
chr24:17045371-17045546
Length
660 bp
Sequences
Splice sites
3' ss Seq
GTTTTTTCTCTCCCTCTCAGGTC
3' ss Score
12.54
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
Exon sequences
Seq C1 exon
AGTTACAACAACAGCAGCAGTGGCGGAAGTGTGTCGTCCATCTCCTCCACTCAGAAGCGACTGGACGACAGCGGAGCCCGTTTCACCAATGCCAACTTTCAGGAAGTTCCACCTCACTCCAGTTCCAGTTCCAAAGATGGTGGCTCCTCTGATGGCAAGAGCTCGGACAGCAAAAGCAAGAAATCCAGTCACAGCACTAGCTCAAGCTCGGGTTCACGGGGTCGCAAATCTGTGGCAGGCAAACCCCACGGCCCTGTGGTCACCACAGCTACTTCATCCACGGCCCCTTCCTCAACAAGTCCTTTTCAGCAAG
Seq A exon
GTCATTTATTAGGAAGCAACAGCAGCAGCAAATCAGCCACCAGTGGGTCTGTGGTTCAGCCCACGTCTGATTTCCTCAGCTTCTCTGATCCCAGCCTAAGGGCTGGCGACTCGTACACACCTCCATCCTTTGGCCGCTGCCACATGAAGGGTGGTGCAGAAAGCGGAGCTTCTGAAAGCATGGTTGCTCTCAACACCTTCAGCATGATACCTCTTTCCCAAAGCTCAAGCTCCAGCTCCAGCAAGCATTATGAAAACTGTCACACGACTGGGGAGCTGGGCAGCCTGGCCTCAGCCAGCTACAAACGACCACAGCCCTCCTCGTCCTCTTCTTCTGCAACATCCTCTTCATCTACTGGCGAGGATGGAGTAAAGAAGAAAAAGAGAGGGAACTGGAGGAACCGATATGGACCTTGCTTCACCACCCAGGACAGTAAAACCACTGATGCGGGAGAGCACATATCCACAATGCCCTCATCCACTTCCCCTTCGCCATCCTCTATGAGTAACATGGTCTGCCGCGGGAGCACTGTCAGCAGTACTGCAAGTGTAGGAGCAGTGGGTGCTGGTACCAGTAGTCTGGGGATTCAAAAGTCCCCGTCCCTCCTCAGGAATGGAAGCTTACAGGGTATGACTGTCAGCTCCCCACCTGCCGTACCAG
Seq C2 exon
GGTCGTACCCCAGCAGCAGTGATGTTGCCTGTCCTTTGCCCAGCGCCGTGCTCGGAGGGTCTATGTCCGCCTCAAACTCTGAGTTGCCGGCTCATCAGTCAGTTGTTGTCACTTCTATGCCCACACTGACGTCACTGCCCTCGGCCGCCCCGTTCACAAGCACCCCATCCACACAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000045401_CASSETTE1
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.946 C2=0.780
Domain overlap (PFAM):
C1:
PF0465211=DUF605=PD(62.0=97.5)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCGTCCATCTCCTCCACTCA
R:
TTTGAGGCGGACATAGACCCT
Band lengths:
357-1017
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]